Query= MSMg01no480_f07.b1 MSMg01no480_f07.b1 CHROMAT_FILE:
MSMg01no480_f07.b1 PHD_FILE: MSMg01no480_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:36 2005
(606 letters)
>mm_chr5_144732077_144733081
Length = 1005
Score = 998 bits (516), Expect = 0.0
Identities = 537/544 (98%), Gaps = 1/544 (0%)
Strand = Plus / Minus
Query: 63 cgaatacaactgaagacttcacattttggcgagggaggatggaacatagtcaagaggaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 cgaatacaactgaagacttcacattttggcgagggaggatggaacatagtcaagaggaca 946
Query: 123 cgaatcatgaaggaggaaataggaaatgaaattattttactctgtcttaggtttccccct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 cgaatcatgaaggaggaaataggaaatgaaattattttactctgtcttaggtttccccct 886
Query: 183 cccatgcccccacccaagctgatggatatgagaattcaacttcctaggtaacagagcatt 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 885 cccatgcccccacccaagctgatggatatgagaattcaatttcctaggtaacagagcatt 826
Query: 243 ttgttgttgttgttgttgttccctaaggatctagcctgtcactcctctgagacagtacgt 302
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ttttttttgttgttgttgttccctaaggatctagcctgtcactcctctgagacagtacgt 766
Query: 303 gtgaaacacgggctctctgtttagttctgttgaccgtcagtgcaacaggaagcagacgtg 362
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gtgaaacacggactctctgtttagttctgttgaccgtcagtgcaacaggaagcagacgtg 706
Query: 363 actgctcactgacccactcggaaaagtcatcttaaacacatttgttttgggaaggggatt 422
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 705 actgctcactgacccactcggaaaagtcatcttaaacacatttgttttgagaaggggatt 646
Query: 423 acctgaaaatgctccccacttttttaatctgcttaacacaggtatcaaattatttccttg 482
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 645 acctgaaaatgctccccacttttttaatctgcttaacaca-gtatcaaattatttccttg 587
Query: 483 tagcttaatctgcgaactgtatttctatacataaaacgcagtatggttttttcaaaaaac 542
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tagcttaatctgcaaactgtatttctatacataaaacgcagtatggttttttcaaaaaac 527
Query: 543 cttgggtttagagagatggcttaaggattaagaactctggttgctccattttttgttttt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cttgggtttagagagatggcttaaggattaagaactctggttgctccattttttgttttt 467
Query: 603 gttt 606
||||
Sbjct: 466 gttt 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1005
Length adjustment: 10
Effective length of query: 596
Effective length of database: 995
Effective search space: 593020
Effective search space used: 593020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_f07.g1 MSMg01no480_f07.g1 CHROMAT_FILE:
MSMg01no480_f07.g1 PHD_FILE: MSMg01no480_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:36 2005
(304 letters)
>mm_chr5_144461253_144461956
Length = 704
Score = 542 bits (280), Expect = e-158
Identities = 297/304 (97%), Gaps = 4/304 (1%)
Strand = Plus / Plus
Query: 1 gtttgacgtgtcttctcatcttcattcttagccatggtttcgagctattcctgagcactg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gtttgacgtgtcttctcatcttcattcttagccatggttgcgagctattcctgagcactg 260
Query: 61 ggtataagcctcactggccagggagaccttaaagggcaggacagccataccttctccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtataagcctcactggccagggagaccttaaagggcaggacagccataccttctccaca 320
Query: 121 gtacttaaggcagacaggtgggaagtgctggtgggtgccatgcagactgagaaagtgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacttaaggcagacaggtgggaagtgctggtgggtgccatgcagactgagaaagtgagg 380
Query: 181 caagaaggagttggagacattgagcagggactaccgtttcacatagggtgtccagtggag 240
|||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 caag---gagttggagacatcgagcaggaactaccgtttcacatagggtgtccagtggag 437
Query: 241 accttactgggaaagggacttatgaggacagcagtgtctctgagcttggcctggtcctta 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 accttactgggaaagg-acttatgaggacagcagtgtctctgagcttggcctggtcctta 496
Query: 301 gaat 304
||||
Sbjct: 497 gaat 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
