BAC Information

Click to search

BAC

Clone NameMSMg01-480H15
Chromosome5 (Build37)
Map Location 140,141,955 - 140,142,182
singlet/doubletsinglet
Overlap genenone
Upstream geneBC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209
Downstream geneLOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480H15.T7 (MSMg01no480_h15.b1)MSMg01-480H15.TJ (MSMg01no480_h15.g1)
ACCAG561108AG561109
length708706
length of high quality
(start - end)
239 (81 - 319)324 (324 - 647)
definitionCHROMAT_FILE: MSMg01no480_h15.b1 PHD_FILE: MSMg01no480_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:47 2005CHROMAT_FILE: MSMg01no480_h15.g1 PHD_FILE: MSMg01no480_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAGAGGAGG
CGCGGAATTCACCACTTTCCAAAAAATTCAGGCCTTTGTCACTGGGAATG
CTTCCTTCCCTTGGTCTTTGAGCTCTTCCTCATCTGTTACCTCCTTGGGG
TGGGACGTTCAGCTGGTCATAGCAGGCTCCCATCCTTGCATCTCCTCACA
CTCTTCTTGCTCTGTGACTTGTACCTGTTCCTATGGAAGAGTGGAGACAT
GCACACACACACACACACACACACACACACACACTCACACACACACTCAC
ACACTCACTTACACAGTCATTTATTTTCACACACTCACACATACTCACAC
ACAATCTCACACACAAACTCACGAATACACACTCACACACTCACAATTTC
ACACATTCACATACACACTCACATATTCACACTCACACATACACACTCTC
ACAGACACACTCTAACACATACTTACACACTTATATAGTCACACACACTA
ACACACTCACACATATACTCACTAACACACACACACACACACACACACAC
ACACACACACACACACACACAAAGCTTGCACTGGCTTTTCCCTGGACGCA
CAGAGCTCTGCCACCCACCATGCTGTGAGGAACCCCCTGCAAGCCAAGAG
TATGTGCCACAGGCAGACATCCAAACTGACAGCCTTATGAGGACCCCAGT
CAATTCCC
NNCCACGATGAAGTGGGAGGCCTGGNGGCCGCCTGTTCAAAACATGGGGT
GAACTATAGAAGTTACAAAAAAAGTCACTTTGTAGACCAGGCTGGCCTTG
AACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCCACCAGGCCCGGCG
CCTTGCCTTCTTTCATCTCAGACCCTTGGGATTCCTGAAAGCAAGGACCT
AACCTGGGGCCCTTGTCAGGCTTGGGAACTGTTCCCACAAGGCAAACTCA
CCATCCACAACACAGGAAGATCTCTGCATCCCACGGACTGTCAGCACGCC
ACACTCAGACAATATTTATTTGTGGCTGAAGATGTGGTTCAGTTTGCAGG
GTGCTTGCCTAACAAGCACAGAGTCCTCAGTTTGATTCCCAACACCGTAT
AAAACAGGCATGGTAGTGCATGGCTATCATACTGGTACGCAGGAGAGGGA
GTCGGGGGATCAGGCTCAATAGAAAGACTAAACCAGCCTGGACTATGTGA
GATGCTAGCTCAAAAATAAAAAAAAATTTAAAAAAAAAAAAAAAAGAAGA
AGAAGAAAGAAGAAGGAAGAAAAGGGAAGGGAGAAGGAAAGGAAAGAAAA
TTGACCTTTCCTAGAAAAGCAACAGCAGCAGCAGCAGCAGCAGCGTGTGT
ACACTGGCCTGTGCTAGCCCTAATCCAACTCTCACCTTGTTTCTGTTCCT
CCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_h15.b1 MSMg01no480_h15.b1 CHROMAT_FILE:
MSMg01no480_h15.b1 PHD_FILE: MSMg01no480_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:47 2005
         (239 letters)



>mm_chr5_140141817_140142455
          Length = 639

 Score =  410 bits (212), Expect = e-119
 Identities = 224/228 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcctttgtcactgggaatgcttccttcccttggtctttgagctcttcctcatctgttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggcctttgtcactgggaatgcttccttcccttggtctttgagctcttcctcatctgttac 307

                                                                       
Query: 61  ctccttggggtgggacgttcagctggtcatagcaggctcccatccttgcatctcctcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctccttggggtgggacgttcagctggtcatagcaggctcccatccttgcatctcctcaca 247

                                                                       
Query: 121 ctcttcttgctctgtgacttgtacctgttcctatggaagagtggagacatgcacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctcttcttgctctgtgacttgtacctgttcctatggaagagtggagacatgcacacacac 187

                                                           
Query: 181 acacacacacacacacacacacactcacacacacactcacacactcac 228
           |||||||||||||||||||||||| ||| ||| |||||||||| ||||
Sbjct: 186 acacacacacacacacacacacacacactcacccactcacacagtcac 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)