Query= MSMg01no481_c01.b1 MSMg01no481_c01.b1 CHROMAT_FILE:
MSMg01no481_c01.b1 PHD_FILE: MSMg01no481_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:39 2005
(712 letters)
>mm_chr5_6248763_6249874
Length = 1112
Score = 1317 bits (681), Expect = 0.0
Identities = 698/709 (98%), Gaps = 11/709 (1%)
Strand = Plus / Plus
Query: 5 gaattctcaatgccttg-ttccaatacaaaatagcacaaaagaaaaatcaaattaaaata 63
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattctcaatgccttggttc-aatacaaaatagcacaaaagaaaaatcaaattaaaata 272
Query: 64 ttttgaatattttcagcaactatttatcacccatagtcctaggtatcattttaataatat 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttt---------cagcaactatttatcacccatagtcctaggtatcattttaataatat 323
Query: 124 atgtaaaattattatatatgatgttaattctattgatgtcctcagtttgtgtttcttaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtaaaattattatatatgatgttaattctattgatgtcctcagtttgtgtttcttaag 383
Query: 184 caataagaaaatgactacaaattgtgattcttgaaaaatatattgaattattacagtagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caataagaaaatgactacaaattgtgattcttgaaaaatatattgaattattacagtagc 443
Query: 244 tgtagaagtctctctgacattgtctacaaatgaaacaagggtaactaaaaatgggctata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtagaagtctctctgacattgtctacaaatgaaacaagggtaactaaaaatgggctata 503
Query: 304 ccatatttcacttaatgattttattgaaatgaaagtaatacaaattttagatatgaaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccatatttcacttaatgattttattgaaatgaaagtaatacaaattttagatatgaaatg 563
Query: 364 tatggtataataatttgtaagtgattatacatattatattattgcttcataacaataatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatggtataataatttgtaagtgattatacatattatattattgcttcataacaataatt 623
Query: 424 caataattaagagatattttgacattgtaaattataactaatatatttgttaatattttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caataattaagagatattttgacattgtaaattataactaatatatttgttaatattttc 683
Query: 484 ttactttcattgaaacaaaagcttttcttctcataaatttcaattttgagatgtaaaata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttactttcattgaaacaaaagcttttcttctcataaatttcaattttgagatgtaaaata 743
Query: 544 taattatcactccctcatttttttctatttctcccttcatagcacttgtgccctattatc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taattatcactccctcatttttttctatttctcccttcatagcacttgtgccctattatc 803
Query: 604 cttcttctagggattttctttcctttaacatggtgtcttttacttcactggtttttgtgg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cttcttctagggattttctttcctttaacatggtgtcttttacttcactggtttttgtgg 863
Query: 664 ctagtcctggtgttattctcacatctaaatagtcagacccaggatctac 712
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ctagtcctggtgttattctcacatctaaatagtcagacccaggatctac 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space: 773604
Effective search space used: 773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_c01.g1 MSMg01no481_c01.g1 CHROMAT_FILE:
MSMg01no481_c01.g1 PHD_FILE: MSMg01no481_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:39 2005
(603 letters)
>mm_chr5_6426790_6427792
Length = 1003
Score = 215 bits (111), Expect = 9e-60
Identities = 123/127 (96%)
Strand = Plus / Minus
Query: 1 cattcggggaagaaaccgtatgaatgtaaggaatgtcagaaaaccttcatccagattgga 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 327 cattcggggaagaaaccgtatgaacataaggaatgtcagaaaaccttcatccagattgga 268
Query: 61 caccttaaccaacataagagagtccataccagggagagaacgtacaactacaagaagggc 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tactttaaccaacataagagagtccataccagggagagaacgtacaactacaagaagggc 208
Query: 121 aggaggg 127
|||||||
Sbjct: 207 aggaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
