Query= MSMg01no481_n12.b1 MSMg01no481_n12.b1 CHROMAT_FILE:
MSMg01no481_n12.b1 PHD_FILE: MSMg01no481_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:36 2005
(678 letters)
>mm_chr5_121752578_121753655
Length = 1078
Score = 1295 bits (670), Expect = 0.0
Identities = 673/674 (99%)
Strand = Plus / Plus
Query: 5 gaattctcctgtgttccttgctgacatagtcatatttgccttgggaacagggcagaatat 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctgtgtaccttgctgacatagtcatatttgccttgggaacagggcagaatat 264
Query: 65 gagccactcttccatgtgtctcttcatcaacaagtaggggctgagcaggagtgagtgggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagccactcttccatgtgtctcttcatcaacaagtaggggctgagcaggagtgagtgggc 324
Query: 125 acttcatggaatgaaaagagctgtaacctaaaatcagtccagcagcaccagagcctctgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttcatggaatgaaaagagctgtaacctaaaatcagtccagcagcaccagagcctctgt 384
Query: 185 ggccaggactctgaggcctggcaatgactagactccggcatgttcgttcagggcagaggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggccaggactctgaggcctggcaatgactagactccggcatgttcgttcagggcagaggc 444
Query: 245 agctgggacactcaattgacataagcatatagatttcaggttaagacatgaaatcccctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctgggacactcaattgacataagcatatagatttcaggttaagacatgaaatcccctt 504
Query: 305 gggttggacttggagtttgcctgagcttgacccaccatagaacctctgaggcagagctgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggttggacttggagtttgcctgagcttgacccaccatagaacctctgaggcagagctgt 564
Query: 365 gggctagcttgtgcaccctgtgaagcagacagaggactctgtcctctgtttaatcaagca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggctagcttgtgcaccctgtgaagcagacagaggactctgtcctctgtttaatcaagca 624
Query: 425 aaatggctgcttctcagcacaggggtatcttgagatgcagtcgttgatggagtcgaggtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatggctgcttctcagcacaggggtatcttgagatgcagtcgttgatggagtcgaggtc 684
Query: 485 tgcatttgactattcaaagctgaggacaagcagcctcacttcttgcacgtgattcttgtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcatttgactattcaaagctgaggacaagcagcctcacttcttgcacgtgattcttgtc 744
Query: 545 ttttctgataggaaaagttctcattctgtggttactccagggccacgctctattcctgat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttttctgataggaaaagttctcattctgtggttactccagggccacgctctattcctgat 804
Query: 605 tcctaattcctgggttctgtacctggtcgccatagcggctgcacttggtgctgctctaca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcctaattcctgggttctgtacctggtcgccatagcggctgcacttggtgctgctctaca 864
Query: 665 aaacctggtgggga 678
||||||||||||||
Sbjct: 865 aaacctggtgggga 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_n12.g1 MSMg01no481_n12.g1 CHROMAT_FILE:
MSMg01no481_n12.g1 PHD_FILE: MSMg01no481_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:36 2005
(547 letters)
>mm_chr5_121927174_121928120
Length = 947
Score = 586 bits (303), Expect = e-171
Identities = 323/333 (96%), Gaps = 7/333 (2%)
Strand = Plus / Minus
Query: 220 ggaaggaaaaagcagcaagccagtaaggtggtttatgtctgtaatcacagcacttgagag 279
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 947 ggaaggaaaaagcagcaagccaggaaggtggtttatgtctgtaatcacagcacttgagag 888
Query: 280 gttgaggctggaggatcgctatgagtgaaaaaacaaacaaacaaacaaac-----aaaca 334
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct: 887 gttgaggctggaggatcgc--tgagtgaaaaaacaaacaaacaaacaaacaacaaaaaaa 830
Query: 335 aaaaaaaacctgcttgggatacatactgagttctgttgcaacctgtattagggtgagctc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aaaaaaaacctgcttgggatacatactgagttctgttgcaacctgtattagggtgagctc 770
Query: 395 ctatattaaaaaacaaacaaaacccaataggtaatttcactcagggccagtagagggagt 454
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 769 ctatattaaaaaacaaacaaaacccaataggtaattccactcagggccagtagagggagt 710
Query: 455 caggatatcatgaaacagattcctgaaccagacagacacactaaaccttcctttaaggtt 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 caggatatcatgaaacagattcctgaaccagacagacacactaaaccttcctttaaggtt 650
Query: 515 tcctacttaaaaatcggtaatcagcctgaaaga 547
|||||||||||||||||||||||||||||||||
Sbjct: 649 tcctacttaaaaatcggtaatcagcctgaaaga 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
