Query= MSMg01no481_p18.b1 MSMg01no481_p18.b1 CHROMAT_FILE:
MSMg01no481_p18.b1 PHD_FILE: MSMg01no481_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:47 2005
(673 letters)
>mm_chr5_61848808_61849880
Length = 1073
Score = 1104 bits (571), Expect = 0.0
Identities = 638/667 (95%), Gaps = 13/667 (1%)
Strand = Plus / Plus
Query: 1 gatatggaactcattcatagtgagagaagaaatgtcataggatctagccctgataaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gatatggaactcattcatagtgagagaagaaatgtcataggatctagccctgataaatgt 249
Query: 61 tctagtagcctgactactgagggcgaaaaccattgtgaagaacttacagctgcatttagt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 250 tctagtagcctgactactgagggcaaaaaccattgtgaagaacttacagctgcatttagt 309
Query: 121 gtttcctgctgtggtgacagtcctcaattcagtgcctgaaattcaggtaatggccattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtttcctgctgtggtgacagtcctcaattcagtgcctgaaattcaggtaatggccattcc 369
Query: 181 ccagaagcttttgtcctcttattctggaatgggcaaatcctagaccatggaagaagaata 240
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccagaggcttttgtgctcttattctggaatgggcaaatcctagaccatggaagaagaata 429
Query: 241 ttatttgaaagagatgcttggttatggctctctttcagtgttgtattttctctctctctc 300
|||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||
Sbjct: 430 ttatttgaaagagatgcttggt-atggctctctttcagtattgtattctctctctctctc 488
Query: 301 tctctctctctctctctctctctctctctttctct-t-----------tgtgggcattac 348
||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct: 489 tctctctctctctctctctctctctctctctctctctctctctctctctgtgggcattac 548
Query: 349 cacatgaatactttacaatatatgataaaggtttattatcactaaacttgaaatgtaaac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cacatgaatactttacaatatatgataaaggtttattatcactaaacttgaaatgtaaac 608
Query: 409 tcagaaacactctaaaatcaaaagtacaataaatcagattgggagaacacttgaattttc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcagaaacactctaaaatcaaaagtacaataaatcagattgggagaacacttgaattttc 668
Query: 469 cgaattagaatctgagatcttggaaaatctcttgtgctctataaactggaaatagaagac 528
|||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct: 669 cgaattagaatctgagttcctggaaaatctcttgtgctctataaactggagatagaagac 728
Query: 529 tatgttaaattggaaatagggtagctctaaactttctctgggttaaagtgtgttctgaga 588
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tatgttaaattggaagtagggtagctctaaactttctctgggttaaagtgtgttctgaga 788
Query: 589 tgataacgatgctggaggactgagggaaaggttttatgagtgacaaaatgttgacccatg 648
||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||
Sbjct: 789 caataacgatgctggagaactgagggaaagtttttatgagcgtcaaaatgttgacccatg 848
Query: 649 tgaaaaa 655
|||||||
Sbjct: 849 tgaaaaa 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_p18.g1 MSMg01no481_p18.g1 CHROMAT_FILE:
MSMg01no481_p18.g1 PHD_FILE: MSMg01no481_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:48 2005
(621 letters)
>mm_chr5_62034349_62035369
Length = 1021
Score = 669 bits (346), Expect = 0.0
Identities = 376/392 (95%), Gaps = 11/392 (2%)
Strand = Plus / Minus
Query: 1 tattcaatccggaagataatagaatttttaaaaaattgatagaactggaaaaatattata 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 tattcaatccggaagataatagaattttttaaaaattgatagaactggaaaaatattata 323
Query: 61 aaaagaggttaatgcaatcccacaaacattttatgtttgttatcataaacagagtttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaaagaggttaatgcaatcccacaaacattttatgtttgttatcataaacagagtttaaa 263
Query: 121 attatttaattgattttatacaattttgaacagttcttataagctgaataaattttataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attatttaattgattttatacaattttgaacagttcttataagctgaataaattttataa 203
Query: 181 tattttt-aaattgtgaaattataatgtagttagctcttttctcccctttgccttcctct 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tattttttaaattgtgaaattataatgtagttagctcttttctcccctttgccttcctct 143
Query: 240 tttaattttccatgcatgtatcttcttgctcttccaagttcatgcctcttttttctttca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tttaattttccatgcatgtatcttcttgctcttccaagttcatgcctcttttttctttca 83
Query: 300 ttgatgaatacatgcgcacgcacacacacacacacacacacacacacacacacacacaca 359
||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||
Sbjct: 82 ttgatgaatacatgcgcgcgcgcgcgcacacacacacacacacacacacacacacac--- 26
Query: 360 cacacaccaatagatgatatagatatagatat 391
|||||||||||||||||||||||||
Sbjct: 25 -------caatagatgatatagatatagatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
