Query= MSMg01no482_g05.b1 MSMg01no482_g05.b1 CHROMAT_FILE:
MSMg01no482_g05.b1 PHD_FILE: MSMg01no482_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:17 2005
(508 letters)
>mm_chr5_52486926_52487832
Length = 907
Score = 957 bits (495), Expect = 0.0
Identities = 501/503 (99%), Gaps = 1/503 (0%)
Strand = Plus / Plus
Query: 4 cctacctaggaagatagaaatgtttccaggagtcttcctggtaaaagtgaagggatgaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cctacctaggaagatagaaatgtttccaggagtcttcctggtaaaagtgaagggatgaca 263
Query: 64 ctcactaggaaaaatgatggcagcattaataacagccttgttgaatttatcactacaagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcactaggaaaaatgatggcagcattaataacagccttgttgaatttatcactacaagt 323
Query: 124 aacctttctcttgcgccttgattttataaacactgcatattaaatctgggccaggtgcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacctttctcttgcgccttgattttataaacactgcatattaaatctgggccaggtgcct 383
Query: 184 acagtcatcttggaagagaatatttcatcatctaaatatctggctatttgaagaaaagga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acagtcatcttggaagagaatatttcatcatctaaatatctggctatttgaagaaaagga 443
Query: 244 aatagtttgtctcaagttctcccagtgttttcacgaccctgtgatgatgcagggacccac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatagtttgtctcaagttctcccagtgttttcacgaccctgtgatgatgcagggacccac 503
Query: 304 ccgcccctccctgcctcatgaatggccacccacagacactacttttgctatgaaaggatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccgcccctccctgcctcatgaatggccacccacagacactacttttgctatgaaaggatt 563
Query: 364 tttctcagaaactgaaaactgtctaagaaaacagtggtttcttctctgaacttggcatct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttctcagaaactgaaaactgtctaagaaaacagtggtttcttctctgaacttggcatct 623
Query: 424 gctcaaaaccaggaagcattggacttttgatgagagccacagacagagtagatactggag 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gttcaaaaccaggaagcattggacttttgatgagagccacagacagagtagatactggag 683
Query: 484 gtgggttgggtgggatggggagg 506
||||||||||||| |||||||||
Sbjct: 684 gtgggttgggtgg-atggggagg 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space: 446706
Effective search space used: 446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_g05.g1 MSMg01no482_g05.g1 CHROMAT_FILE:
MSMg01no482_g05.g1 PHD_FILE: MSMg01no482_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:17 2005
(394 letters)
>mm_chr5_52541051_52541844
Length = 794
Score = 762 bits (394), Expect = 0.0
Identities = 394/394 (100%)
Strand = Plus / Minus
Query: 1 atgttataagcatttctttagaaatggttgaaaatgcttctaaaatgtgattatcgacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atgttataagcatttctttagaaatggttgaaaatgcttctaaaatgtgattatcgacca 535
Query: 61 tggtatgcatgatcgttgtaattgttgacattccttttagaagttgtgaaatgttacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tggtatgcatgatcgttgtaattgttgacattccttttagaagttgtgaaatgttacaac 475
Query: 121 ttgtgcttctgtagacacaatcttctgtctccatacagaggcactgacttcaataaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttgtgcttctgtagacacaatcttctgtctccatacagaggcactgacttcaataaagtc 415
Query: 181 tatttatactaatcttggcccaagtccttctgtatcttttattctaagagtctctatagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tatttatactaatcttggcccaagtccttctgtatcttttattctaagagtctctatagt 355
Query: 241 gagtggctgcttttcttttttcattgtaattatactgttactacgtatttagcgtttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gagtggctgcttttcttttttcattgtaattatactgttactacgtatttagcgtttttt 295
Query: 301 aaaaggagtactccttaggtacagtagccattaaacctgggttttaaagagcataaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaaaggagtactccttaggtacagtagccattaaacctgggttttaaagagcataaatgt 235
Query: 361 agcactttcttaggttaatcagtatgtaatctaa 394
||||||||||||||||||||||||||||||||||
Sbjct: 234 agcactttcttaggttaatcagtatgtaatctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
