Query= MSMg01no482_j18.b1 MSMg01no482_j18.b1 CHROMAT_FILE:
MSMg01no482_j18.b1 PHD_FILE: MSMg01no482_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:33 2005
(144 letters)
>mm_chr5_8779800_8780343
Length = 544
Score = 236 bits (122), Expect = 4e-67
Identities = 140/154 (90%), Gaps = 14/154 (9%)
Strand = Plus / Minus
Query: 1 atgacttccaggtgcagggggtaagtattgatgcaagtatgctcatataactgtatggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atgacttccaggtgcagggggtaagtattgatgcaagtatgctcatataactgtatggtt 256
Query: 61 ttcttctctgttgtaaattttgtcctttgggtttttgttt------------tttgtttg 108
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 255 ttcttctctgttgtaaattttgtcctttgggtttttgtttgttttttgtttgtttgtttg 196
Query: 109 tttgttttggtttttgggggggttgggttttttt 142
||||||||||||||||||||||||| |||||||
Sbjct: 195 tttgttttggtttttgggggggttg--ttttttt 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space: 72896
Effective search space used: 72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no482_j18.g1 MSMg01no482_j18.g1 CHROMAT_FILE:
MSMg01no482_j18.g1 PHD_FILE: MSMg01no482_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:33 2005
(624 letters)
>mm_chr5_8595175_8596198
Length = 1024
Score = 1141 bits (590), Expect = 0.0
Identities = 617/626 (98%), Gaps = 3/626 (0%)
Strand = Plus / Plus
Query: 1 atttacattcatgagtctgcccagttattcaacattcaatttaaaatgcaaattttaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttacattcatgagtctgcccagttattcaacattcaatttaaaatgcaaattttaagg 260
Query: 61 tagtcttagatttttctactgataattttttaaagtgtattttgtgagataattataaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tagtcttagatttttctactgataattttttaaagtgtattttgtgagataatcataaat 320
Query: 121 gatggtcaagggaaatttcataagataaagtagttgtgaatactaagatacattatggca 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatagtcaagggaaatttcataagataaagtagttgtgaatactaagatacattatggca 380
Query: 181 tattttatttaatgtgctgtttgatcataaaat-ttggtaataaaatataattaccacaa 239
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 381 tattttatttaatgtgctgtttgatcataaa-tcttggtaataaaatataattaccacaa 439
Query: 240 aaataacatttctaaaaatatttgaaaatacattcatattctttgctttcataaaaacat 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaataacaattctaaaaatatttgaaaatacattcatattctttgctttcataaaaacat 499
Query: 300 actttatattaaatttatttttaatatattcaccattgctctcttcagacacaccagaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actttatattaaatttatttttaatatattcaccattgctctcttcagacacaccagaag 559
Query: 360 agggcatcagaccttattgcaggtgattgtgagtcaccatgtggctgctgggaattgaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 agggcatcagaccttattgcaggtgattgtgagtcaccatgtggctgctggaaattgaac 619
Query: 420 tcaggaactctggaagaacaatcagcgctctttttttgtt-attaagtatttattaaatt 478
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 620 tcaggaactctggaagaacaatcagcgctctttttttttttattaagtatttattaaatt 679
Query: 479 taaatttccaatgctatcccacaagtccccctcttggtcccccacccacctccccaccca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taaatttccaatgctatcccacaagtccccctcttggtcccccacccacctccccaccca 739
Query: 539 cccactcccacttcttggccctagcgttcccctgtactgaggcagataaagtttgcaaga 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 740 cccactcccacttcttggccctggcgttcccctgtactgaggcagataaagtttgcaaga 799
Query: 599 ccaaggggcctctctttcctctgatg 624
||||||||||||||||||||||||||
Sbjct: 800 ccaaggggcctctctttcctctgatg 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
