Query= MSMg01no482_m14.b1 MSMg01no482_m14.b1 CHROMAT_FILE:
MSMg01no482_m14.b1 PHD_FILE: MSMg01no482_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:46 2005
(560 letters)
>mm_chr5_52706445_52707403
Length = 959
Score = 890 bits (460), Expect = 0.0
Identities = 498/516 (96%), Gaps = 11/516 (2%)
Strand = Plus / Plus
Query: 1 agctgtgtctcctaggtagatgattccaaactcaagtcaaatgaatgtcaactatcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgtgtctcctaggtagatgattccaaactcaagtcaaatgaatgtcaactatcacag 260
Query: 61 gcagtgcgttcttcctccctttgaatacccacctttgataataaaccacccagtccagta 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtgcgttattcctccctttgaatacccacctttgataataaaccacccagtccagta 320
Query: 121 ttgggaatcaagtatctcccagtccccaagccctaggtatgtgtgtctgtgtgtcggcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggaatcaagtatctcccagtccccaagccctaggtatgtgtgtctgtgtgtcggcct 380
Query: 181 cactgctggggtatcagaacttcactgatacgtggctcagggaggcaaaatgcaggggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgctggggtatcagaacttcactgatacgtggctcagggaggcaaaatgcaggggta 440
Query: 241 tctttta---tgcatgtctgccttgccgctgtggaccagagtgctgtcagagtgtcgctc 297
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cc----aggatgcatgtctgccttgccgctgtggaccagagtgctgtcagagtgtcgctc 496
Query: 298 agggaaggcagaacgcaatctggggaagggggtcccagcttgttctccagatgagaaatg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agggaaggcagaacgcaatctggggaagggggtcccagcttgttctccagatgagaaatg 556
Query: 358 gaggaggctgggacagaggttgtggttctcaagctctggggtcactcagatgctgctgag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaggaggctgggacagaggttgtggttctcaagctctggggtcactcagatgctgctgag 616
Query: 418 aaatgtgagcctgggatggaggcagggtgtgtgtgtgtgcgtgcgcgtgcgtgtgcgcgt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 617 aaatgtgagcctgggatggaggcagggtgtgtgtgtgtgcgtgcgcgtgcgtgtg----t 672
Query: 478 gtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgt 513
||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 673 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_m14.g1 MSMg01no482_m14.g1 CHROMAT_FILE:
MSMg01no482_m14.g1 PHD_FILE: MSMg01no482_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:46 2005
(587 letters)
>mm_chr5_52856318_52857305
Length = 988
Score = 762 bits (394), Expect = 0.0
Identities = 477/534 (89%), Gaps = 51/534 (9%)
Strand = Plus / Minus
Query: 55 caagttcaagtccagagagaaagtgaagtcacctgtctaatgtcccataaaatcatagga 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 caagttcaagtccagagagaaagtgaagtcacctgtctaatgtcccataaaatcatagga 929
Query: 115 cactacaaacacctttaatttcctctgtctgtctctgtctctgtctctgtctctttctgt 174
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 928 cactacaaacacctttaatttcctctgtctgtctctgtc----------------tctgt 885
Query: 175 ctctgtctctgtctctccctccctccctccctcccttcctccttcctcctccctccctcc 234
||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 884 ctctgtctctg--------tccctccctccctccgt------------ctccctccctc- 846
Query: 235 gtcctccctccttcttttctccctctctccctcccttcctccctccctccctcccttcct 294
||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct: 845 --cctccctcc-------ctcc----ctccctccctccctccctccctccctcccttcct 799
Query: 295 tcctccccccacccccttcccaaccttgagctcttggtgatcttcttccctccccgcagc 354
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 798 tccttcccccacccccttcccaaccttgagctcttggtgatcttcttccctccccgaagc 739
Query: 355 gttagaattatagacaggagccattgtgcctggctgccaaacccctttggaggtcactct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gttagaattatagacaggagccattgtgcctggctgccaaacccctttggaggtcactct 679
Query: 415 cttttcctatagggattgcttagcaatgtggtgatctgatggttttaggcctggatttgt 474
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cttttcctataggaattgcttagcaatgtggtgatctgatggttttaggcctggatttgt 619
Query: 475 gcacatggatctgttaaggctccatagactgagaacagggat-aaaaaagatccccaaat 533
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 618 gcacatggatctgttaaggctccatagactgagaacagggataaaaaaagatccccaaat 559
Query: 534 aaaactgggagactaagcaaagcaaaaaagagctgccatgcagctcctgtgagc 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taaactgggagactaagcaaagcaaaaaagagctgccatgcagctcctgtgagc 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
