BAC Information

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BAC

Clone NameMSMg01-482P12
Chromosome5 (Build37)
Map Location 72,672,146 - 72,692,112
singlet/doubletdoublet
Overlap geneAtp10d, Corin
Upstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8
Downstream geneNfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482P12.T7 (MSMg01no482_p12.b1)MSMg01-482P12.TJ (MSMg01no482_p12.g1)
ACCAG563008AG563009
length718747
length of high quality
(start - end)		656 (59 - 714)660 (73 - 732)
definitionCHROMAT_FILE: MSMg01no482_p12.b1 PHD_FILE: MSMg01no482_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:00 2005CHROMAT_FILE: MSMg01no482_p12.g1 PHD_FILE: MSMg01no482_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,672,146 - 72,672,801)(72,691,453 - 72,692,112)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
ATTTCCTCCAGGCACACCTCAAACTTGTAGTATTCCTCCTGCCTCAGCAT
ACTGAGTGCTGGGATTACAGACACATAGCAGCATACTGGACTTCAGTTTT
CTTTCTTACACATTCATGTTGACTCATTTGATTCTTCGAGGTGGACAAGT
AACTAACTACATTATGGTCTTTAGACTACATTTGCTCTTGGTCTTTCAAA
GCAGAGTTTTTGCTGGGCTGGTCTCGTTTAAGATACGATGCTGGAGAAAG
ATGAACCTGCAGGGCAGCCACTTCCTCGTGCTTCCTCCAAAGAGACTGTC
CAATATTACCACAAGAATCCCATGCTTTGGGACCCTCAGTCTCAAGATAA
CTGAATGTTGCCTATTCTGTTGGCACCATTCCTTGTAACTACTAAGAAAT
AACTGGGAAGGATGGTGGGAAAAAATACATGTGTGGCGGTGTGACGAGTC
TTCTCTGAGCCAGGTGTTCAACCTTTGTTCTCTTCATCTGAAGTGAAAAT
ATCTGCAACTCTGCCACTTATATGGCAAATAAATGGCTGGGTAGCTTTGT
GCAAATGTCTTATTCTCTTTGCGTCTCAGTGGCTTAGATTATTCGGCACA
CAATGGCAAAGTACCACAATGATAGCAATTGAAAACTCCCACAGTCTAAG
AGCCAGAAGTCTGAAATT

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATCCTTTCTGTATTCAAATTAAGCTTA
AAATCTCTACCAGATTTGTTCCCGTTACTGGGAATTTTCGGAGTATGTCA
CTTAGATGACTGTGATGTCAAAAGCCAGGTCAATCCTTGAGGAAATAATT
TGTTTGCTTATGTGGGAATGAATAAGAATCTTTCCATTCCGCAAAACACA
CAAATTAAAAAGGAGAAAAAAATTAAATAACATTCCACACCCAATTAATT
CTGAAAATTAGTCTGCTTGTATTCACCCAAAACAGAAAAGTTACAGAAAT
ATATTTCAAAGTGCAGCAAAATGTTGCATGGAGTATATAACATTTTGCAA
TTTCCCCCTCATGATGTCTAACATCCGGTATTGCCATTTGCCTCATTGAT
AATTAAAACTAAATTTTAAGGATGCTTTTAAGCACTGGGCCACCTTATGG
GAATCAATTTCCAAAGCAATTAGTGGTTACAAGTATTTTTTCCCACTAAA
AAGTTTCAAAACACAAACCTTCATACTAAATTAATTAGCCAGACATGAAC
TATGTAACATGCAAATGCCTTTTTGAACAAGTAGGATGCACTGCTAAACT
TCACCAGCAACCAAACTGCCTCAGTATTGCTTACAGGGACTACCTGCAAT
TTTATATGTGTATTTTGTACTCTTTTTCTAGATAGTTCAAATGCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_p12.b1 MSMg01no482_p12.b1 CHROMAT_FILE:
MSMg01no482_p12.b1 PHD_FILE: MSMg01no482_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:00 2005
         (656 letters)



>mm_chr5_72671946_72673001
          Length = 1056

 Score = 1222 bits (632), Expect = 0.0
 Identities = 650/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcacacctcaaacttgtagtattcctcctgcctcagcatactgagtgctgggattac 60
           |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 201 caggcacatctcaaacttgtagtattcctcctgcctcatcgtactgagtgctgggattac 260

                                                                       
Query: 61  agacacatagcagcatactggacttcagttttctttcttacacattcatgttgactcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacacatagcagcatactggacttcagttttctttcttacacattcatgttgactcatt 320

                                                                       
Query: 121 tgattcttcgaggtggacaagtaactaactacattatggtctttagactacatttgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattcttcgaggtggacaagtaactaactacattatggtctttagactacatttgctct 380

                                                                       
Query: 181 tggtctttcaaagcagagtttttgctgggctggtctcgtttaagatacgatgctggagaa 240
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 381 tggtctttcaaagcagagtttttgctgggctggcctcgtttaagatacgatgctggggaa 440

                                                                       
Query: 241 agatgaacctgcagggcagccacttcctcgtgcttcctccaaagagactgtccaatatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgaacctgcagggcagccacttcctcgtgcttcctccaaagagactgtccaatatta 500

                                                                       
Query: 301 ccacaagaatcccatgctttgggaccctcagtctcaagataactgaatgttgcctattct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacaagaatcccatgctttgggaccctcagtctcaagataactgaatgttgcctattct 560

                                                                       
Query: 361 gttggcaccattccttgtaactactaagaaataactgggaaggatggtgggaaaaaatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttggcaccattccttgtaactactaagaaataactgggaaggatggtgggaaaaaatac 620

                                                                       
Query: 421 atgtgtggcggtgtgacgagtcttctctgagccaggtgttcaacctttgttctcttcatc 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtgtggcgttgtgacgagtcttctctgagccaggtgttcaacctttgttctcttcatc 680

                                                                       
Query: 481 tgaagtgaaaatatctgcaactctgccacttatatggcaaataaatggctgggtagcttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaagtgaaaatatctgcaactctgccacttatatggcaaataaatggctgggtagcttt 740

                                                                       
Query: 541 gtgcaaatgtcttattctctttgcgtctcagtggcttagattattcggcacacaatggca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgcaaatgtcttattctctttgcgtctcagtggcttagattattcggcacacaatggca 800

                                                                   
Query: 601 aagtaccacaatgatagcaattgaaaactcccacagtctaagagccagaagtctga 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagtaccacaatgatagcaattgaaaactcccacagtctaagagccagaagtctga 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_p12.g1 MSMg01no482_p12.g1 CHROMAT_FILE:
MSMg01no482_p12.g1 PHD_FILE: MSMg01no482_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:00 2005
         (660 letters)



>mm_chr5_72691253_72692312
          Length = 1060

 Score = 1261 bits (652), Expect = 0.0
 Identities = 658/660 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcctttctgtattcaaattaagcttaaaatctctaccagatttgttcccgttactggg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 860 tatcctttctgtattcaaattaagcttaaaatctccaccagatttgttcccgttactggg 801

                                                                       
Query: 61  aattttcggagtatgtcacttagatgactgtgatgtcaaaagccaggtcaatccttgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aattttcggagtatgtcacttagatgactgtgatgtcaaaagccaggtcaatccttgagg 741

                                                                       
Query: 121 aaataatttgtttgcttatgtgggaatgaataagaatctttccattccgcaaaacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaataatttgtttgcttatgtgggaatgaataagaatctttccattccgcaaaacacaca 681

                                                                       
Query: 181 aattaaaaaggagaaaaaaattaaataacattccacacccaattaattctgaaaattagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aattaaaaaggagaaaaaaattaaataacattccacacccaattaattctgaaaattagt 621

                                                                       
Query: 241 ctgcttgtattcacccaaaacagaaaagttacagaaatatatttcaaagtgcagcaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgcttgtattcacccaaaacagaaaagttacagaaatatatttcaaagtgcagcaaaat 561

                                                                       
Query: 301 gttgcatggagtatataacattttgcaatttccccctcatgatgtctaacatccggtatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttgcatggagtatataacattttgcaatttccccctcatgatgtctaacatccggtatt 501

                                                                       
Query: 361 gccatttgcctcattgataattaaaactaaattttaaggatgcttttaagcactgggcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gccatttgcctcattgataattaaaactaaattttaaggatgcttttaagcactgggcca 441

                                                                       
Query: 421 ccttatgggaatcaatttccaaagcaattagtggttacaagtattttttcccactaaaaa 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctttatgggaatcaatttccaaagcaattagtggttacaagtattttttcccactaaaaa 381

                                                                       
Query: 481 gtttcaaaacacaaaccttcatactaaattaattagccagacatgaactatgtaacatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttcaaaacacaaaccttcatactaaattaattagccagacatgaactatgtaacatgc 321

                                                                       
Query: 541 aaatgcctttttgaacaagtaggatgcactgctaaacttcaccagcaaccaaactgcctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaatgcctttttgaacaagtaggatgcactgctaaacttcaccagcaaccaaactgcctc 261

                                                                       
Query: 601 agtattgcttacagggactacctgcaattttatatgtgtattttgtactctttttctaga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agtattgcttacagggactacctgcaattttatatgtgtattttgtactctttttctaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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