NGTAAGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATATAAAACACAAAGCTAACAGCCTTAACATATATTG
CAGTAGCTATGTGCTAAGCATTGGCAAACACATTAAGTGAGGTTAGATAT
TTCAATGTTCACACAAACAAAGAATATTTTATTAGAATAAAAAAATGTCA
TTCATCTATATAAGCTTTACTTTTCATCTAAAATAAAACTTAAGTTGACC
TTCTGTGTTTTGATGTAACAAATATGGCTACATTATATGAGCCATAAGAC
TTGAACATGCTCGTTACACATGAATCTATTTTCTTTATCATGAGTTCATA
TTTAAATTTATTGAATACATTTCCAACTTGGTTTGCTAAAGAGCAACCTT
GTCCTAGAAGACAGGTCTGAAACAGCACCTGGCCCTTGTGCATGTGCTCA
GCAAACATGGTTGCCATCCAGGCCCAATTCAGTCTAATACAACCTCTCCT
CCAACTGTGAACTGCTGGAATAAGGAGAAGAGCTGCTCCTGAAGAACAAG
ATGCCATTACCATTGAGTCCTAGACTCACTGGCCATCCCCAGAAATGAAA
CTGCTGTGAGTCAAGCCTGACCTGCTTCCTCTGGTGTAAGACAGCATANG
TCCTTGTTTCTGCTGGAAGTACAAATATTGAGCCTGGAAAGTCTCAGGGC
ATCCCTTATGTAGACAGAATTTCTGCTGCCATGTATGGAAGAATTN

TTTTTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGATACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTCCTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACACAAGATATAAGATAC
AATTTGCTAATAACACATGAAACTCCAGAAGAATGAAGACTGTAGTG

Query= MSMg01no483_d04.b1 MSMg01no483_d04.b1 CHROMAT_FILE:
MSMg01no483_d04.b1 PHD_FILE: MSMg01no483_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:19 2005
         (587 letters)



>mm_chr5_60221557_60222543
          Length = 987

 Score =  994 bits (514), Expect = 0.0
 Identities = 558/578 (96%), Gaps = 10/578 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccat-ataaaacacaaagctaacagccttaacatatattgcagtagctatgtgc 62
           |||||||||| | |||||||||||||||||||||||         |||||||||||||| 
Sbjct: 212 ggaattccataaaaaaacacaaagctaacagcctta---------gcagtagctatgtgg 262

                                                                       
Query: 63  taagcattggcaaacacattaagtgaggttagatatttcaatgttcacacaaacaaagaa 122
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taagcactggcaagcacattaagtgaggttagatatttcaatgttcacacaaacaaagaa 322

                                                                       
Query: 123 tattttattagaataaaaaaatgtcattcatctatataagctttacttttcatctaaaat 182
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 323 tattttattagaataaaaaaatgccattcatctatataagctttacttttcatctgaaat 382

                                                                       
Query: 183 aaaacttaagttgaccttctgtgttttgatgtaacaaatatggctacattatatgagcca 242
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 aaaacttaagttgaccttctgtgttttgatgtgacaaatatggctacattatatgagcca 442

                                                                       
Query: 243 taagacttgaacatgctcgttacacatgaatctattttctttatcatgagttcatattta 302
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taagacttgaacatgctctttacacatgaatctattttctttatcatgagttcatattta 502

                                                                       
Query: 303 aatttattgaatacatttccaacttggtttgctaaagagcaaccttgtcctagaagacag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aatttattgaatacatttccaacttggtttgctaaagagcaaccttgtcctagaagacag 562

                                                                       
Query: 363 gtctgaaacagcacctggcccttgtgcatgtgctcagcaaacatggttgccatccaggcc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtctgaaacagcacctggcccttgtgcatgtgctcagcaaacatggttgccatccaggcc 622

                                                                       
Query: 423 caattcagtctaatacaacctctcctccaactgtgaactgctggaataaggagaagagct 482
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 caattcagtctaatacaacctctcctccagctgtgaactgctggaataaggagaagagct 682

                                                                       
Query: 483 gctcctgaagaacaagatgccattaccattgagtcctagactcactggccatccccagaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gctcctgaagaacaagatgccattaccattgagtcctagactcactggccatccccagaa 742

                                                 
Query: 543 atgaaactgctgtgagtcaagcctgacctgcttcctct 580
            |||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtgaaactgctgtgagtcaagcctgacctgcttcctct 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)