Query= MSMg01no483_d19.b1 MSMg01no483_d19.b1 CHROMAT_FILE:
MSMg01no483_d19.b1 PHD_FILE: MSMg01no483_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:22 2005
(617 letters)
>mm_chr5_124150189_124151206
Length = 1018
Score = 1110 bits (574), Expect = 0.0
Identities = 604/614 (98%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcaa-atttttcttatcctgaggtacattccagtggattcagccatgttctca 63
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaacaggtttcttatcctgaggtacattccagtggattcagccatgttctca 264
Query: 64 aattcaaagggtgttattccagtggcaaacttgctcatgtcaggtactgggctatgggtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattcaaagggtgttattccagtggcaaacttgctcatgtcaggtactgggctatgggtt 324
Query: 124 tttggggccatcggaggccggctgtccgggtgaatgggctgctggctgcttccattgctc 183
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 325 tttggggccatcggaggccggctgtccgggtgaatgggctgctggttgctcccattgctc 384
Query: 184 atgttcatgttcaacacaccgccattgtcgagaagagcatctcccgggcccccctcagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgttcatgttcaacacaccgccattgtcgagaagagcatctcccgggcccccctcagca 444
Query: 244 gcagcttcctcttctctctgagagagcactgctgcccctgctgctgggctgcaggatggc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagcttcctcttctctctgagagagcactgctgcccctgctgctgggctgcaggatggc 504
Query: 304 tcgggtccagctgtgtctacagaagcagctggctcctggggctcagccagcactggcttt 363
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 tcgggtccagctgtgtctacagaagcagctggttcctggggctcagccagcactggcttt 564
Query: 364 tccagggcctttccttcggggaaagggaggtcaaactcgtttggacacggggaggaggcc 423
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccagggcctttccttcggggacagggaggtcaaactcgtttggacacggggaggaggcc 624
Query: 424 actgagttcccagttaaaggtgtgtctccaggaacgtctgagtcgccgttccctccctca 483
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 625 actgagttcccagttaaaggtgtgtctccaggaacatctgagtcgccattccctccctcg 684
Query: 484 gcctgctggagagccgcccagatctgcctctgctgctcttccagctcctccagcgtcagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcctgctggagagccgcccagatctgcctctgctgctcttccagctcctccagcgtcagg 744
Query: 544 gcatcctcatccatggctgaggctgcgggtcgggcctggggtgagtcactgggagtcagt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcatcctcatccatggctgaggctgcgggtcgggcctggggtgagtcactgggagtcagt 804
Query: 604 ggtggggttccctt 617
||||||||||||||
Sbjct: 805 ggtggggttccctt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_d19.g1 MSMg01no483_d19.g1 CHROMAT_FILE:
MSMg01no483_d19.g1 PHD_FILE: MSMg01no483_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:22 2005
(618 letters)
>mm_chr5_124312241_124313258
Length = 1018
Score = 1195 bits (618), Expect = 0.0
Identities = 618/618 (100%)
Strand = Plus / Minus
Query: 1 agatactctaatttctcagccctcggtagatggcaagaaaccagggacagacagatgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 agatactctaatttctcagccctcggtagatggcaagaaaccagggacagacagatgaag 759
Query: 61 tgtctcttagttcaagtgttcccagttttctgtctcttattaccttcggctcctacaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tgtctcttagttcaagtgttcccagttttctgtctcttattaccttcggctcctacaagt 699
Query: 121 gggaatttaaaagcagggtttgccttcttctggaaggcggcagacagaagctccgagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gggaatttaaaagcagggtttgccttcttctggaaggcggcagacagaagctccgagcca 639
Query: 181 agcagggatttccccatgaatcacggggaacctggtggtgaaactcctggtccttgatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agcagggatttccccatgaatcacggggaacctggtggtgaaactcctggtccttgatcg 579
Query: 241 atcggagttaacagttgacattcatttgtttggtttttgtgtgttgaacagcaactgtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atcggagttaacagttgacattcatttgtttggtttttgtgtgttgaacagcaactgtgc 519
Query: 301 gccagacaccgttctgggtggtggcaatacggccaggagttaagcagatagatggtcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gccagacaccgttctgggtggtggcaatacggccaggagttaagcagatagatggtcttc 459
Query: 361 gtcacattgaacccaaattcaaggcagggaggcaggcaggaatgaagaaaagatcatggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtcacattgaacccaaattcaaggcagggaggcaggcaggaatgaagaaaagatcatggc 399
Query: 421 tgaaaagcaacaggtgttgtgaaaccagccaggtgtgactatgggaacagagagggtggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgaaaagcaacaggtgttgtgaaaccagccaggtgtgactatgggaacagagagggtggc 339
Query: 481 tagggtggggatgactgggagggcctccaggaggaagtgatattgagttgagccaggatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tagggtggggatgactgggagggcctccaggaggaagtgatattgagttgagccaggatt 279
Query: 541 aactagacagagcaaggtatgaaaacctctgggctgggggtgggggggcacagggagggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aactagacagagcaaggtatgaaaacctctgggctgggggtgggggggcacagggagggg 219
Query: 601 agtgagagcaaaggtcct 618
||||||||||||||||||
Sbjct: 218 agtgagagcaaaggtcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
