BAC Information

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BAC

Clone NameMSMg01-483K02
Chromosome5 (Build37)
Map Location 36,807,703 - 36,940,936
singlet/doubletdoublet
Overlap geneGrpel1, Ccdc96, Tbc1d14
Upstream geneCpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik
Downstream geneD5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483K02.T7 (MSMg01no483_k02.b1)MSMg01-483K02.TJ (MSMg01no483_k02.g1)
ACCAG563514AG563515
length735741
length of high quality
(start - end)
584 (75 - 658)621 (84 - 704)
definitionCHROMAT_FILE: MSMg01no483_k02.b1 PHD_FILE: MSMg01no483_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:54 2005CHROMAT_FILE: MSMg01no483_k02.g1 PHD_FILE: MSMg01no483_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,807,703 - 36,808,286)(36,940,316 - 36,940,936)
sequence
CTCTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAAGAGGAG
CCGCGGAATTCCGTCATACTCAAAATTATTGGTGGAAATGGTCTGTCCAT
CAGAACAACAGCGGTCACGGATTAGCTAAAAAGCAGCAGTAGGTGGGAAA
ACCGGTGTAAGGGGCGTCCGCGCATGCTCAGTGTGGGCGCAGTGACGCGA
CCTCGGGGGCAGTCATGGCGGCTCGGTGTGTGAGGCTGGCGCGTCGCAGC
CTCCCGGCTTTGGCACTGTCGTTCAGGTAAGAGAGCTTCACTCCTCTGCG
TCGGCCTCACTCACGGCCGATATTTCTGGTGGGGGGTTTAGCGGCAGGAC
TGGTCCCCGCAGGCGGTGCCCGTGCACCCTGAAGTCACATCCTCACCATC
GAGTCCCTGTGCCTGTTCTCAACGCGCGGCTGTCCTGGTGTTTACTGTGC
GGCACTGCGCGAACTGGGCTCAAGAGACGAGAAGTGGGGACGCTGGGGCG
TAAATGCGGGGATCTGGGTGATGCGTCAGGTGGAAGGCTCCGCCATTTGT
TTGTCTGGCGACACACGGCACTCTCTCGGGCATAGGGGCACCACCCCTCC
TGGAATTGCAAAAGTCAAGCTTAGAAGCGGGAGACTTGCCCAAGGTCAGG
CAGCCAGGCAGAAGCCCGCCCGACCANGGGCTGGGGTTGCTAATCCCTAA
TCCAGTCCAGGATGTGTACTGCCTGGTTTGTGGGC
NAAAATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCATTGGTGCCAGGG
TGTAGGACTCCCTCTCAAGGGCTTCGGGGATTTTATGCCTTGGACACAGG
TTTGTCCTCCAAGAGACCTCAGGCTGGGGACGCAAGGGCAGTAGCCCAGG
ACGCCTGTTTGCTGAGAATATTCAGGAAGGGGAGTGCCAGCTGGCTTCAA
GGACAAAAGACCATCCTTCCTCTGCTGAGGAAATGGTATTGAAAGAACCT
GAATCCTGCCACAATCTTAGGCTGAAAGACCGGTAGAGGGGAAGCTTTGT
GGAGTGAAGAGCTGGGTCTGGTGACTTATCTATGGAAGTATTCAGGTTGG
GTTTCCTGTGGTCACTGATGCCAAACCATCACTAGATCATCCCACAGCAA
GCTGCAGACCAATGATAACCATCAGCCCCTTGTGCACTTAGGCCCAAGGC
TGCCTGATGTGAAAGGTCTGGTCACATGCACTCTCCCCAAGGGTTCCTGC
AGCAGGGCAGTGAGTAGAGTGCCAACTGCTGGGAAGGGCAGGACCAATTA
NATGGGAATGGTGCAGTGGGCGCCCTCTGGAGCTGATCTCAGGGACATCC
CTCCCCTTACTCCAAGAGCGTTTACCTACTGGCAGCACTCTGCTGCCTCA
TCACTGTGGTTCTCCGAGGCTTGGAATTTCTCAGCATCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_k02.b1 MSMg01no483_k02.b1 CHROMAT_FILE:
MSMg01no483_k02.b1 PHD_FILE: MSMg01no483_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:54 2005
         (584 letters)



>mm_chr5_36807503_36808486
          Length = 984

 Score = 1091 bits (564), Expect = 0.0
 Identities = 579/584 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attattggtggaaatggtctgtccatcagaacaacagcggtcacggattagctaaaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attattggtggaaatggtctgtccatcagaacaacagcggtcacggattagctaaaaagc 260

                                                                       
Query: 61  agcagtaggtgggaaaaccggtgtaaggggcgtccgcgcatgctcagtgtgggcgcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagtaggtgggaaaaccggtgtaaggggcgtccgcgcatgctcagtgtgggcgcagtg 320

                                                                       
Query: 121 acgcgacctcgggggcagtcatggcggctcggtgtgtgaggctggcgcgtcgcagcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 acgcgacctcgggggcagtcatggcggctcggtgtgtgaggctggcgcgccgcagcctcc 380

                                                                       
Query: 181 cggctttggcactgtcgttcaggtaagagagcttcactcctctgcgtcggcctcactcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggctttggcactgtcgttcaggtaagagagcttcactcctctgcgtcggcctcactcac 440

                                                                       
Query: 241 ggccgatatttctggtggggggtttagcggcaggactggtccccgcaggcggtgcccgtg 300
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccgagagctctggtggggggtttagcggcaggactggtccccgcaggcggtgcccgtg 500

                                                                       
Query: 301 caccctgaagtcacatcctcaccatcgagtccctgtgcctgttctcaacgcgcggctgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caccctgaagtcacatcctcaccatcgagtccctgtgcctgttctcaacgcgcggctgtc 560

                                                                       
Query: 361 ctggtgtttactgtgcggcactgcgcgaactgggctcaagagacgagaagtggggacgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggtgtttactgtgcggcactgcgcgaactgggctcaagagacgagaagtggggacgct 620

                                                                       
Query: 421 ggggcgtaaatgcggggatctgggtgatgcgtcaggtggaaggctccgccatttgtttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggcgtaaatgcggggatctgggtgatgcgtcaggtggaaggctccgccatttgtttgt 680

                                                                       
Query: 481 ctggcgacacacggcactctctcgggcataggggcaccacccctcctggaattgcaaaag 540
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggtgacacacggcactctctcgggcataggggcaccacccctcctggaattgcaaaag 740

                                                       
Query: 541 tcaagcttagaagcgggagacttgcccaaggtcaggcagccagg 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaagcttagaagcgggagacttgcccaaggtcaggcagccagg 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no483_k02.g1 MSMg01no483_k02.g1 CHROMAT_FILE:
MSMg01no483_k02.g1 PHD_FILE: MSMg01no483_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:54 2005
         (621 letters)



>mm_chr5_36940116_36941136
          Length = 1021

 Score = 1164 bits (602), Expect = 0.0
 Identities = 616/621 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccattggtgccagggtgtaggactccctctcaagggcttcggggattttatgccttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 821 caccattggtgccagggtgtaggactccctctcaagggcttcggggactttatgccttgg 762

                                                                       
Query: 61  acacaggtttgtcctccaagagacctcaggctggggacgcaagggcagtagcccaggacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 acacaggtttgtcctccaagagacctcaggctggggacgcaagggcagtagcccaggacg 702

                                                                       
Query: 121 cctgtttgctgagaatattcaggaaggggagtgccagctggcttcaaggacaaaagacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cctgtttgctgagaatattcaggaaggggagtgccagctggcttcaaggacaaaagacca 642

                                                                       
Query: 181 tccttcctctgctgaggaaatggtattgaaagaacctgaatcctgccacaatcttaggct 240
           ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 641 tccttcctctgctgaggaaatggtactgaaagaacctgaatcttgccacaatcttaggct 582

                                                                       
Query: 241 gaaagaccggtagaggggaagctttgtggagtgaagagctgggtctggtgacttatctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaaagaccggtagaggggaagctttgtggagtgaagagctgggtctggtgacttatctat 522

                                                                       
Query: 301 ggaagtattcaggttgggtttcctgtggtcactgatgccaaaccatcactagatcatccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggaagtattcaggttgggtttcctgtggtcactgatgccaaaccatcactagatcatccc 462

                                                                       
Query: 361 acagcaagctgcagaccaatgataaccatcagccccttgtgcacttaggcccaaggctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acagcaagctgcagaccaatgataaccatcagccccttgtgcacttaggcccaaggctgc 402

                                                                       
Query: 421 ctgatgtgaaaggtctggtcacatgcactctccccaagggttcctgcagcagggcagtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctgatgtgaaaggtctggtcacatgcactctccccaagggttcctgcagcagggcagtga 342

                                                                       
Query: 481 gtagagtgccaactgctgggaagggcaggaccaattanatgggaatggtgcagtgggcgc 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 341 gtagagtgccaactgctgggaagggcaggaccaattagatgggaatggtgcagtgggcgc 282

                                                                       
Query: 541 cctctggagctgatctcagggacatccctccccttactccaagagcgtttacctactggc 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 281 cctctggagctgatctcagggacatccctccccttaccccaagagcgtttacctactggc 222

                                
Query: 601 agcactctgctgcctcatcac 621
           |||||||||||||||||||||
Sbjct: 221 agcactctgctgcctcatcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)