BAC Information

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BAC

Clone NameMSMg01-483O14
Chromosome5 (Build37)
Map Location 123,807,219 - 123,807,770
singlet/doubletsinglet
Overlap geneBcl7a
Upstream geneVps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824
Downstream geneMlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483O14.T7 (MSMg01no483_o14.b1)MSMg01-483O14.TJ (MSMg01no483_o14.g1)
ACCAG563726AG563727
length767786
length of high quality
(start - end)		397 (327 - 723)566 (79 - 644)
definitionCHROMAT_FILE: MSMg01no483_o14.b1 PHD_FILE: MSMg01no483_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:17 2005CHROMAT_FILE: MSMg01no483_o14.g1 PHD_FILE: MSMg01no483_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCAAAGAGGAGCCGC
GGAATTCTCCCTTTACAAAAAACTCTTCGCTCATGCCTGAAGATGTCTCA
TCCTGGGTTTCGGCACCACTCCCTGTGCACGCCTGACTCGCCAGCAAAGC
AGACACCACACCAGGATCCTTCTGCACACGTTTCTTGGGAGAGCTTGATT
GCAGAGGCGAAAAGACCCCGAGCCCAGAACTGGTGCTGCTTATATAGGCC
TATGAGAGGTGTGTCTCACACATGGATTGGTTATGCTTACTACCTCATTT
GCATGTCTCACATCTGATTGGTTATCATACCTTATTTGCATGTCTCTCAT
CTGTTTGGTTATATTCTCAAAACCTCATCTTGGCAAAAATCTTTACTGCA
TATGTACACATTGCCCGCCTACCCAAACTTATGCCTGGTGGCTAGCAGTA
GCCAGCGCCACCCTGCAACGGCACATGTGGCTTCCCACACTCCCCAACCC
TGGAATTACAGATCTGCACTGCCCTGCTGTTTTTAAGTGGATACTGGGGA
TCCAAACTCAAGTCCTCATGACTAGGTGGCAATCGCCTTACTGACTGAGT
CATCTCCTAAGCCACCTTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTCCCTCCCCTCCCCT
CCCCCTTCCNCTCCNCT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCCAGCCTGGGTTACAGAG
TAAAATGGCTCAGTAGATAAGTGTGCTTGCCACTAAACCTGGGGACCAGA
GATCAATCCTTAGGACCCACACGGCAGCTCACAACTGTTTATAACTCCAG
GAGATCTGATACATCCTCCCCTCCCATTGGACAGGATACAAGTAGCAGAA
TACAAATATGCATAAAATTTAAAAATGCAAAAAAAAAAAAAAGGTGGAAG
AGAGATAAGCGTGGCAAACTCCGGTAGAAGAGTGCCGGCATGACTCAGTG
ACCAGGTGGACTAGGGTGGCCAAGTCTCCCCTAAGGGATGAAAGCTGTTC
CTGCCTGAGCCAGCTGCTTCCAGCTCAGTAACACCTGACTTCTCAGACAA
CAGCAGTAAAGCAGGTTTTCAGACTTATAAATGCCAAAAGCTGCTAATCG
TTTGAATCCTAAATGTCCCTAAAGGCCCACATGCAAAAGGCTAAATCCTC
ATCTTGATGCAGTTGGGAGGCTGGTGGGCCTGACGGGAGGTCTCTGGCCA
TTGAAGGGATCCCCTTTAAGGCGTACCCACCTCACTTTGAGACACTGTTT
TANTCTCTCCTCCCCCTCCCCCCCCCCAAACAGGGTTTCTCTGTGTAGTT
CTGTAGCTCTGGCTGTCCTGGAACTCATTATGTAGAACAGGTTGGGCTCG
AAATCAGAAATCCACCTGCCTTTTGCTCCAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_o14.g1 MSMg01no483_o14.g1 CHROMAT_FILE:
MSMg01no483_o14.g1 PHD_FILE: MSMg01no483_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:17 2005
         (566 letters)



>mm_chr5_123806805_123807770
          Length = 966

 Score =  971 bits (502), Expect = 0.0
 Identities = 537/552 (97%), Gaps = 7/552 (1%)
 Strand = Plus / Minus

                                                                       
Query: 22  gtaaaatggctcagtagataagtgtgcttgccactaaacctggggaccagagatcaatcc 81
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 966 gtaaaatggctcagtagataagtgtgcttgccactaaacctggggaccggagatcaatcc 907

                                                                       
Query: 82  ttaggacccacacggcagctcacaactgtttataactccaggagatctgatacatcctcc 141
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tcaggacccacacggcagctcacaactgtttataactccaggagatctgatacatcctcc 847

                                                                       
Query: 142 cctcccattggacaggatacaagtagcagaatacaaatatgcataaaatttaaaaatgca 201
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 846 cctcccattggacaggatacaagtagcagaatacaaatgtgcataaaatttaaaaatgca 787

                                                                       
Query: 202 a------aaaaaaa-aaaaaggtggaagagagataagcgtggcaaactccggtagaagag 254
           |      ||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 786 aaaaaataaaaaaataaaaaggtggaagagagataagtgtggcaaactccggtagaagag 727

                                                                       
Query: 255 tgccggcatgactcagtgaccaggtggactagggtggccaagtctcccctaagggatgaa 314
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggccggcatgactcagtgaccaggtggactagggtggccaagtctcccctaagggatgaa 667

                                                                       
Query: 315 agctgttcctgcctgagccagctgcttccagctcagtaacacctgacttctcagacaaca 374
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 666 agctgttcctgcctgagccagctgcttccggctcagtaacacctgacttctcagacaaca 607

                                                                       
Query: 375 gcagtaaagcaggttttcagacttataaatgccaaaagctgctaatcgtttgaatcctaa 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gcagtaaagcaggttttcagacttataaatgccaaaagctgctaatcgtttgaatcctaa 547

                                                                       
Query: 435 atgtccctaaaggcccacatgcaaaaggctaaatcctcatcttgatgcagttgggaggct 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atgtccctaaaggcccacatgcaaaaggctaaatcctcatcttgatgcagttgggaggct 487

                                                                       
Query: 495 ggtgggcctgacgggaggtctctggccattgaagggatcccctttaaggcgtacccacct 554
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 486 ggtgggcctgaggggaggtctctggccattgaagggatcccctttaaggtgtacccacct 427

                       
Query: 555 cactttgagaca 566
           ||||||||||||
Sbjct: 426 cactttgagaca 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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