Query= MSMg01no484_i21.b1 MSMg01no484_i21.b1 CHROMAT_FILE:
MSMg01no484_i21.b1 PHD_FILE: MSMg01no484_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:10 2005
(240 letters)
>mm_chr5_122562006_122562647
Length = 642
Score = 437 bits (226), Expect = e-127
Identities = 238/242 (98%), Gaps = 2/242 (0%)
Strand = Plus / Minus
Query: 1 caaactcacagcaatcctccttcctttggctccccagtattgggtctgaaggtttcttcc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 494 caaactcacagcaatcctccttcctttggctccccagtattgggtttgaaggtttcttcc 435
Query: 61 tgcc-ccccc-ccccccagacaccctgggagcccgagcaagctagaagcttattttttgt 118
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgcctcccccgccccccagacaccctgggagcccgagcaagctagaagcttattttttgt 375
Query: 119 taaataagctgaaaattggcactttcaggattgggggagggagtgtctttgtgatgtctt 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 374 taaataagctgaaaattggcactttcaggattgggggagggagtgtctttgtgatgtcat 315
Query: 179 ctaccacccaggctcttcttggtgtgtggtttccatcccaaggatgcctggtggtaccac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctaccacccaggctcttcttggtgtgtggtttccatcccaaggatgcctggtggtaccac 255
Query: 239 gg 240
||
Sbjct: 254 gg 253
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 642
Length adjustment: 9
Effective length of query: 231
Effective length of database: 633
Effective search space: 146223
Effective search space used: 146223
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no484_i21.g1 MSMg01no484_i21.g1 CHROMAT_FILE:
MSMg01no484_i21.g1 PHD_FILE: MSMg01no484_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:10 2005
(595 letters)
>mm_chr5_122398229_122399222
Length = 994
Score = 1112 bits (575), Expect = 0.0
Identities = 590/595 (99%), Gaps = 1/595 (0%)
Strand = Plus / Plus
Query: 1 catcaatttatagatcagcgcagggctgcccgggcgatggggcggcgcgcggcggggctc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catcaatttatagatcagcgcagggctgcccgggcgatggggcggcgcacggcggggctc 260
Query: 61 gaccagcaccaggccggtgtgtgattaagataagccccggttcctttcatacattcctta 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccagcaccaggccggtgtgtgattaagataagccccggttcctttcatacattcctta 320
Query: 121 gtgggggctcattctccggcaggcggagacgttcaccgcagttaaagatcactgcagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggggctcattctccggcaggcggagacgttcaccgcagttaaagatcactgcagctt 380
Query: 181 ctcagacgccaaatttgaggggattgatcaataaatcaaatcaggccgatcgatcggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagacgccaaatttgaggggattgatcaataaatcaaatcaggccgatcgatcggcca 440
Query: 241 atcaggagagtctagccggtgcattatcgccggcgccttccaagccagagcttttcatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaggagagtctagccggtgcattatcgccggcgccttccaagccagagcttttcatgg 500
Query: 301 cttccatcaaaacagcctggccctggccggcagccagcggctggcctgtctcatagccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttccatcaaaacagcctggccctggccggcagccagcggctggcctgtctcatagccca 560
Query: 361 ggccgccgagaggggctgcctgcccagcgggagagcagtaaatttctcatcaaacagcgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccgccgagaggggctgcctgcccagcgggagagcagtaaatttctcatcaaacagcgg 620
Query: 421 atggaggagcagggcgaacatctgttgtgctgcagtgagtgactctgacagaccgccgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggaggagcagggcgaacatctgttgtgctgcagtgagtgactctgacagaccgccgcc 680
Query: 481 cgacggcagcatccccggggcacgtggggaggggggggcccatggaatgttccacgggtt 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 681 cgacggcagcatccccggggcacgtggggaggggggg-cccatggaatgttccactggtt 739
Query: 541 acgtccagcaggtaatttaaggagacttttgcattcttctcgcagctgcagcctg 595
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 740 acgtccagcaggtaatttaaggagacttttgcattcttctcacagctgcagcctg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
