Query= MSMg01no484_k18.b1 MSMg01no484_k18.b1 CHROMAT_FILE:
MSMg01no484_k18.b1 PHD_FILE: MSMg01no484_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:19 2005
(566 letters)
>mm_chr5_73786810_73787776
Length = 967
Score = 1023 bits (529), Expect = 0.0
Identities = 557/571 (97%), Gaps = 9/571 (1%)
Strand = Plus / Plus
Query: 1 tgtttgtctggatgctgccatgctcctacgttgatgataatggactgaacctctgaacct 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tgtttgtctggatgctgccatgctcctacattgatgataatggactgaacctctgaacct 260
Query: 61 gtaagctagccccaattaaatgttgtccttataagagttaccttggtcatagtgtctgtt 120
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 261 gtaagccagccccaattaaatgttgtccttgtaagggttaccttggtcatagtgtctgtt 320
Query: 121 cacagcagtaaaaccctaagacagtaaccttgtcttccttggcaagtttcttctgtctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagcagtaaaaccctaagacagtaaccttgtcttccttggcaagtttcttctgtctta 380
Query: 181 atcatagggctgaaactgatgtaacggcactgaaggggctgcaaaaagcacatcccactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcatagggctgaaactgatgtaacggcactgaaggggctgcaaaaagcacatcccactc 440
Query: 241 tctgg-----ttttcaaactgatggaaaccctttaagcagaactaatgacaccatggtga 295
||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggagcca----caaaccgatggaaaccctttaagcagaactaatgacaccatggtga 496
Query: 296 ctttagctgaaacagagtcaggaaccattttctttgagaagttctacattcttgtcggac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctttagctgaaacagagtcaggaaccattttctttgagaagttctacattcttgtcggac 556
Query: 356 acacatgaaaaaaaatcgttttgactaaaatcaaatctttattattttttttataactgt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acacatgaaaaaaaatcgttttgactaaaatcaaatctttattattttttttataactgt 616
Query: 416 cttagtcagggtttctattcctgcacaaacatcatgaccaagaagcagttgtggaggaaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttagtcagggtttctattcctgcacaaacatcatgaccaagaagcagttgtggaggaaa 676
Query: 476 gggtttattcggcttacacttccatactgctcttcatcaccaaaggaagtcaggacttga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gggtttattcggcttacacttccatactgctcttcatcaccaaaggaagtcaggacttga 736
Query: 536 aataatcaggtcaggaagcaggagctgatgc 566
|||||||||||||||||||||||||||||||
Sbjct: 737 aataatcaggtcaggaagcaggagctgatgc 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_k18.g1 MSMg01no484_k18.g1 CHROMAT_FILE:
MSMg01no484_k18.g1 PHD_FILE: MSMg01no484_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:19 2005
(685 letters)
>mm_chr5_73936648_73937730
Length = 1083
Score = 1042 bits (539), Expect = 0.0
Identities = 583/599 (97%), Gaps = 7/599 (1%)
Strand = Plus / Minus
Query: 89 acaacagagatctgcaacaatcaagaacaggccatattttggaccatatattaaacagac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 acaacagagatctgcaacaatcaagaacaggccatattttggaccatatattaaacagac 1024
Query: 149 tgaaattgtacttctctgactgaattaaactagctatccataatacaaagattacccagg 208
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 tgaaattgtacttctctgacagaattaaactagctatccataatacaaagattacccagg 964
Query: 209 aaaccccaaatacctgcaaaacaatcaatgtatttctaaacaatgtattgaagagaactg 268
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 963 -aaccccaaatacctgcaaaacaatcaacgtatttctaaacaatgtattgaagagaactg 905
Query: 269 gcaagggagagaagctg-g-gaagaggattaggagccgctgtgctctgcagcaagtcgat 326
||||||||||||||||| | | ||||||| |||||| ||||||||||||||||||||||
Sbjct: 904 gcaagggagagaagctgagcg--gaggattgggagccactgtgctctgcagcaagtcgat 847
Query: 327 caaaacagaacctaaaaatgtgctaactgaacgcagatggaaatacaacttcccaaactt 386
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 846 caaaacagaacctacagatgtgctaactgaacgcagatggaaacacaacttcccaaactt 787
Query: 387 gtaagctacagctaagcagaagaaacacgagtaacagattcacctcagtatgtatttaag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gtaagctacagctaagcagaagaaacacgagtaacagattcacctcagtatgtatttaag 727
Query: 447 ctgaaatgaatggctttggtaattaaatgataaaaatgagtagttcctattcgtcattgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctgaaatgaatggctttggtaattaaatgataaaaatgagtagttcctattcgtcattgt 667
Query: 507 gtaagaaggaatataattcaccactacctgttgaaaatacccctcaaaacctagagactg 566
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gtaagaagga--ataattcaccactacctgttgaaaatacccctcaaaacctagagactg 609
Query: 567 aacccatgggaatcccacagtcctcaatctaccaggaacaggaatgtgtacccaaactcc 626
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 608 aacccatgggaaccccacagtcctcaatctaccaggaacatgaatgtgtacccaaactcc 549
Query: 627 aatgtcacaccaaggagttattggggctctgtaagtgactatggcacaagccctccaac 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aatgtcacaccaaggagttattggggctctgtaagtgactatggcacaagccctccaac 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1083
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1073
Effective search space: 724275
Effective search space used: 724275
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
