AATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGGCGC
GGAATTCAACTCCTTGCAATCAAGAAAACTCTGAAATAACTTCTGGTTCA
TTGCCTCTGTTCATTCTCTACACATACTCATGCAGGCAATTGTAATTAAA
TGCAATGTGCCACACACAAACTAAAATAAGTCATGAAATTCTTGCAAAAA
GGGATTTGGTGTGAGAGCAAAGAGTATGAGAAGATAATTTGGAGAACATT
AATCAAAGAATATTTAATACATGTATGAAAATGTTAAGGAAATAAATATT
TGAAATAAAACAAAACCAGAATTTTATTGAAGATACTATATCTAGTAATG
AGTTATTATTGTAAGTTCCCCTCTGAAGACTATTAACAAGACACAAATAT
ACACTCCTTGTTTTTTTTAATTATGTATTTACTTAAACTAACAAGCCTAT
GAACAAGTGCAAAACTAACCCTTAAAAATGTGTCAGATGAAAAGTGCAAG
AGTCTGTTTTAGTTTGTTTCTTTGTTTCATTTATATTTTGAGTGTTCTCA
AAGGAGACTCAACAAAATTCCATTTGAAAAGCCATCAGAATACTAGATGA
ATTAACAAACTGTAGGACACAAAAATGACATTACTTTTCGACCTTAAACT
TGTAGCATAAACCAAAACCCAAAACCAAACAAACACTCTACCTCAAAAAA
AAAAAAAGTAGAAACTAAAGTTATATAGCTTACTAAAGCAACAAAAAATA
AGT

NCTCCGATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATC
ATGAATGCGTGTTGGATCTTGTCGAATGCTTTTTCTGCATCTAATGAGAT
AATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACGTTGA
TGGATTTTTGTATACTAAACCATCCCTGCATCCCTGGAATGAAACCTACT
TGGTAAGGTTGGATGATTGTTTTGATGTGTTCTTGGATTCAGGTAGCAAG
AACTTTATTGAGGATTTTTGCATCGATATCTCTATCTTTGTTGGGTCTTT
TTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGTA
GAGTATCTTCTGTTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGGATT
AGATCTTCTTTGAAGGTCTGATTGATCTCTGCACTAAACCCATCTGGTCC
AGGGCTTTTTTTTTTTTTTTGGTTGGGAGACTATTTATGACTGCTTCTAT
TTCTTTAGAGGATATAGGACTGTTTAGATCATTAACCTGATCATGATTTA
ACTTTGGTACCTGGTCTCTGCCTAGAAAATTATCCATTTCATCCAGGTTC
TCCAGTTTTGTTGAGTATAACCTTTTGTAGAAGGATATGATGGTGTTTTG
GATTTCATCAGGATCTGTTGTTATGTCTGGCTTT

Query= MSMg01no484_l12.b1 MSMg01no484_l12.b1 CHROMAT_FILE:
MSMg01no484_l12.b1 PHD_FILE: MSMg01no484_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:23 2005
         (679 letters)



>mm_chr5_40596393_40597480
          Length = 1088

 Score = 1143 bits (591), Expect = 0.0
 Identities = 664/699 (94%), Gaps = 23/699 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaactctgaaataacttctggttcattgcctctgttcattctctacacatactcatgca 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aaaactctgaaataacttcttgttcattgcctctgttcattctctacacatactcatgca 783

                                                                       
Query: 61  ggcaattgtaattaaatgcaatgtgccacacacaaactaaaataagtcatgaaattcttg 120
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 782 ggcaattgtaattaaatgcaaggtgccacacacaaactaaaataaggcatgaaattcttg 723

                                                                       
Query: 121 caaaaagggatttggtgtgagagcaaagagtatgagaagataatttggagaacattaatc 180
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 722 caaagagggatttggtgtgagagcagagagtatgagaagataatttggagaacattaatc 663

                                                                       
Query: 181 aaagaatatttaatacatgtatgaaaatgttaaggaaataaatatttgaaataaaacaaa 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaagaatatctaatacatgtatgaaaatgttaaggaaataaatatttgaaataaaacaaa 603

                                                                       
Query: 241 accag----aattttattgaagatactatatctagtaatgagttattattgtaagttccc 296
           |||||    ||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 accagaaaaaa---tattgaagatactatatctagtaatgagttattattgtaagttccc 546

                                                                       
Query: 297 ctctgaagactattaacaagacacaaatatacactcctt-gtttttttt---aattatgt 352
           |||||||||||||||||||||| |||||||||| ||||| |||||||||   |||||| |
Sbjct: 545 ctctgaagactattaacaagacgcaaatatacagtccttggttttttttttaaattatat 486

                                                                       
Query: 353 atttacttaaactaacaagcctatgaacaagtgcaaaactaacccttaaaaatgtgtcag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atttacttaaactaacaagcctatgaacaagtgcaaaactaacccttaaaaatgtgtcag 426

                                                                       
Query: 413 atgaaaagtgcaagagtctgttttagtttgtttctttgtttcatttatattttgagtgtt 472
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 425 atgaaaagtgcaagagtctgttctagtttgtttctttgtttcatttatattttgagtgtt 366

                                                                       
Query: 473 ctcaaaggagactcaacaaaattccatttgaaaagccatcagaatactagatgaattaac 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctcaaaggagactcaacaaaattccatttgaaaagccatcagaatactagatgaattaac 306

                                                                       
Query: 533 aaactgtaggacacaaaaatgacattacttttcgaccttaaacttgtagcataaaccaaa 592
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 305 aaactgtaggacacaaaaatgactttactttttgaccttaaacttgtagcataaaccaaa 246

                                                                       
Query: 593 acccaaaaccaa---ac-aaacactctacctcaaaaaaaaaaaaa--------gtagaaa 640
           ||||||||||||   || |||||||||||||||||||||||||||        |||||||
Sbjct: 245 acccaaaaccaaccaaccaaacactctacctcaaaaaaaaaaaaaaaaaagaagtagaaa 186

                                                  
Query: 641 ctaaagttatatagcttactaaagcaacaaaaaataagt 679
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ctaaagttatatagcttactaaagcaacaaaaaataagt 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1088
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1078
Effective search space:   721182
Effective search space used:   721182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)