BAC Information

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BAC

Clone NameMSMg01-484M23
Chromosome5 (Build37)
Map Location 52,731,873 - 52,732,020
singlet/doubletsinglet
Overlap genenone
Upstream genePpargc1a, Dhx15
Downstream geneSod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484M23.T7 (MSMg01no484_m23.b1)MSMg01-484M23.TJ (MSMg01no484_m23.g1)
ACCAG564408AG564409
length790775
length of high quality
(start - end)
253 (76 - 328)162 (59 - 220)
definitionCHROMAT_FILE: MSMg01no484_m23.b1 PHD_FILE: MSMg01no484_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:30 2005CHROMAT_FILE: MSMg01no484_m23.g1 PHD_FILE: MSMg01no484_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATAGCTCGCATACTCACTCATTGAGAAATCCTGTAC
TAAGCATTAGTAACAGCAATCCTTCCCTAAGCATGGGGCATTAGTCAGAA
GAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGAG
AAAATATTGTAGTTTGGCCAAGAGAGACTATGAAACTGGAAGTTCACGAA
TCAAAAGTGGTCATTACAGACGTTGGCAGATTCCCTTAGGGCATAAAACT
GATGGAGGTGGGGNGGTGGGGGTGGTTTTTTTTTTTNTNNNNNNNNNNNT
NTNTNNTTTNNNTTTTTTTTTTTTTTTNTTTTNTTTNNNTTTTTTTTTTT
TTTTTTTTTTTTNTNNTTNCCCCCCCCCCCCCCCCCCCTTCTTCCCCCCT
CCTCCTTTCTTTTCTCTTTTCTTTCCCCCCCCCCCCCCTTTCTTTTTTTC
CCCCCTTTTCCCCCCCCCTCTTTCTCTCTTTCCCTCTTTTTTCTCCCTTC
TTCTCCCCTTCCCTTTTTTTCTTCTCTTTTCTCTCCCTCTTTTTTTTCTT
TTTTTTTCCCCTCCCTTCCCTTTTTTTCCCTCCTCCCCCCTCCTTTCTTT
CTTCCTCTCTTTCCTTTTCCTCTTTCTCCCCCTTTTTCCCCCCTCCCTCT
TTCCTCCCCTTCTTTTTTTTTCCTCTCCCCCCCTTTTTTTTTTTTTTTTT
TCTCTCCTTCTCCTCTCCCTCCCTTTTCTTTCTCTCCTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATACAACCAAGGTTAAGGAGAAGAAGTGGAACAGGTTCTCAG
ATATCTTGTGTTGAAATGATACATATGGATAGGAGAATGGGGAACAATGG
ATGGAAGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAAGAGATTATTCTGGTGTGGACCATTTT
CTCCGCTTGCTTTCTAGTTTTCAAAACTGGAGAGGCCGCACACACCGCCG
GCCGCAGGCTTTCTTTTTTTTTTGTCCGTGCCCCCGTTCTCGCTCGCCCT
GTTTTTTCCCCTTTTCCCCCGNCGCTGCCCGCCCCCTCCCCTCCCCTTCT
TCCTTTTTTGTCCCCCCCCCCCCCCCTCCCCCCTCCCTCCGCCTGCCCGC
GCNNNTTCTTTTCTTCCCCCTCCCTTCTCCCGCTTCCTCTTTCTCTCCCC
CCTTCTTTTTTCTTTTCTTCCTTTTCCCCCCCCTCTTTTTCCTTCCCCCC
TCCCTTTTCTCCCTTTTCCCCTTCCTCTCTCTCCCTCTCCTTTCCTCCCC
CCTCTTCCCCTTTCTTTCCCTTTCTCCTTCCTCCCCCCTCTCTTCCTTTC
CTTGTTTTCTCTCTCCATCCCCTTGCTTCCCTTCTCCCTCCTTCTCTCTC
TTCTTCCTCCTCTTTCCTCCCCCCCCCCCCCTCTCCTCTTCCTTTTCTCT
CCCCCCCTCTTTCTCTCGCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_m23.g1 MSMg01no484_m23.g1 CHROMAT_FILE:
MSMg01no484_m23.g1 PHD_FILE: MSMg01no484_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:31 2005
         (162 letters)



>mm_chr5_52731673_52732231
          Length = 559

 Score =  242 bits (125), Expect = 9e-69
 Identities = 143/151 (94%), Gaps = 5/151 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacaaccaaggttaaggagaagaagtggaacaggttctcagatatcttgtgttgaaatg 60
           ||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 atacaaccaaggttaagg---agaagtggaacaggttctcagacatcttgtgttgaaatg 257

                                                                       
Query: 61  atacatatggataggagaatggggaacaatggatggaagtg--gagagagagagagagag 118
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 258 atacatatggataggagaatggggaacaatggatggaagtgctgagagagagagagagag 317

                                          
Query: 119 agagagagagagagagagagagagagagaga 149
           | |||||||||| ||||||||||||||||||
Sbjct: 318 aaagagagagagggagagagagagagagaga 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 559
Length adjustment: 8
Effective length of query: 154
Effective length of database: 551
Effective search space:    84854
Effective search space used:    84854
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)