Query= MSMg01no485_e11.b1 MSMg01no485_e11.b1 CHROMAT_FILE:
MSMg01no485_e11.b1 PHD_FILE: MSMg01no485_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:10 2005
(627 letters)
>mm_chr5_142124725_142125751
Length = 1027
Score = 1033 bits (534), Expect = 0.0
Identities = 606/640 (94%), Gaps = 20/640 (3%)
Strand = Plus / Plus
Query: 5 gaattctgtggttccc---atgtaccttagattgcttag-catttatccacagaaaaata 60
|||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 191 gaattctgtggt---cgggatgttccttagattgcttagccatttatccacagaaaaata 247
Query: 61 tgtttg-----ttgttttgttttgttcgtttgtttgttttatgaaacagagtctcctgta 115
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgtttgtttttttgttttgttttgttcgtttgtttgttttatgaaacagagtctcctgtg 307
Query: 116 gcccaggatacccttgttgttgccatatagctgagggtgcctttggactcctgatccttc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcccaggatacccttgttgttgccatatagctgagggtgcctttggactcctgatccttc 367
Query: 176 tgcctctagccaccttgtgaatgtccatgcagtgaacactagagcaaataaaagcagatt 235
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 368 tgcctctagccaccttgtgaatgtccatgcagtgaacattagagcaaataaaagcagatt 427
Query: 236 ctaaataccatcatgtcagcggaagctattgattattgttataaaaatctccccgtcaga 295
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 428 ctaaataccatcaagtcagcggaagctattgattagtgttataaaaatctccccgtcaga 487
Query: 296 gcactgctcaggactacggtgctaaaacttacacatggctggagagacgtttcagtggat 355
|||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct: 488 gcactgctcaggactacgttactaaaagttacacatggctggagagacgtttcagtggat 547
Query: 356 gaaagctttgaagagcaagcctgggaccagaggtcaggtccttaggactcatggacagat 415
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 548 gaaagctttgaagagcaagtctgggaccagaggtcaggtcctcaggactcatggacagat 607
Query: 416 atggca--------gaattctggaacttaggatgtagagatagggaatatctagagccag 467
|||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atggcaatttcccagaatcctggaacttaggatgtagagatagggaatatctagagccag 667
Query: 468 ctgggttggcaggctcaatggattgcattctggattcagataaagaccttgattcataaa 527
||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 668 ctgggttagcaggctcaatgaattacattctggattcagataaagaccttgattcataaa 727
Query: 528 taaagtgaagaatgattgaggcagatacctgatgtcaatctctggcctgtataaagagtg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 taaagtgaagaatgattgaggcagatacctgatgtcaatctctggcctgtataaagagtg 787
Query: 588 tgtacttacatacatgcagacatatatacatatatgtgtg 627
||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tgtacttacatacatgcagacatatatacatatatgtgtg 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_e11.g1 MSMg01no485_e11.g1 CHROMAT_FILE:
MSMg01no485_e11.g1 PHD_FILE: MSMg01no485_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:10 2005
(552 letters)
>mm_chr5_142274062_142275013
Length = 952
Score = 1052 bits (544), Expect = 0.0
Identities = 550/552 (99%)
Strand = Plus / Minus
Query: 1 tggcagggaagcatcacataccctatagatagatctgcaactggattctaaatggctcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tggcagggaagcatcacataccctatagatagatctgcaactggattctaaatggctcgg 693
Query: 61 ccaggatggagaacccaacatctccatgcaggtctggagagacagttttcaaatgcttcc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 692 ccaggatggagaacccaacatctccatgcgggtctggagagacagttttcaaatgcttcc 633
Query: 121 ttctgctttagatagccaacccatgccagagtccattcaagggctttcactcttttaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttctgctttagatagccaacccatgccagagtccattcaagggctttcactcttttaata 573
Query: 181 ttagaagtgtgaggaatgtacgataggccacaaaaagctgtgccttatggaacagtcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttagaagtgtgaggaatgtacgataggccacaaaaagctgtgccttatggaacagtcctc 513
Query: 241 tcatataactgtgcaaagacattattcttggggactggctttcaactactaaccatctat 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcagataactgtgcaaagacattattcttggggactggctttcaactactaaccatctat 453
Query: 301 gagggctgcagttaaattagcatgacagaggacacaagaatgttaagtgggcttcggaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gagggctgcagttaaattagcatgacagaggacacaagaatgttaagtgggcttcggaat 393
Query: 361 taaaagccgggtttgtcagcctgaaggaggatcagctaaaatgatagcctatctggaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 taaaagccgggtttgtcagcctgaaggaggatcagctaaaatgatagcctatctggaaat 333
Query: 421 gttgtttgaagagcagacattaaaatgaaagaggtgaaggaagcaggaaggagagccaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gttgtttgaagagcagacattaaaatgaaagaggtgaaggaagcaggaaggagagccaca 273
Query: 481 gtcatttctgttttaatctcagcttcatccctcacagagaacctcattacaccggacatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtcatttctgttttaatctcagcttcatccctcacagagaacctcattacaccggacatt 213
Query: 541 ttgaatattggg 552
||||||||||||
Sbjct: 212 ttgaatattggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
