TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGCAAAATAACAAAAAGTCTGACTTGGCCATGCACGTTACTGCCACAT
CTGATAGCATGCTGTTCTCAGCCCTGACATCCCCTAAAGCTTACTTTATT
AAAGATAACCAAGAAAAGTGACTCTCACTGGGGATTTGCTGCCTCTATTT
GAGTGTCTTATTAATGTAGTTGTGCTCACTGAAAACAAGGACACTCCGAA
CATTCTCAAGAACACAGCTTTTACTGGGCAGTGGTGGTGCACGCCTTTAA
TCGCACCACTTGGGAGGCAGAGGCGGTGGATTTTTGAGTTCGAGGCAGCC
TGGTTACAGAGTGATTCTAGGAAGCCAGGGCTCACAGAGAACCCTGTCTC
CAAACAACATCATCAAAACTAACAACCAAAAGAAGAACCCGACTTTCTAC
CCTTGGCCTTTACCCAAAGGCCGAGAAACGAAGAAACACAAACTTTTTTT
TCCTCAACAAAATGCCTTAAATCCCCCTTATTGAAGAGTTTTGGTTCATA
GCCCCAGGTCTTTAATTTCCATACCAGCCTAAATCTCCTTTGGAAAATGG
CACATTCCCAGGGGAGACTCCCGGTGGTTTTTTTAACCGAGTACAAAACC
ACGTGGGGCGTAAGTATCCCCACGTCCGGGGTTGTGTTTCTCGCAAGAGA
GGAGAAAAAACATCCCTCCTCCCCATATATAAATGTTTTTTTTTTTTTTT
AATAATCTATTTTCCTGGGGCGCCTTTTTTTTTTTTTTCTNTCTATAGAC
AAAAAAATATTGAGTTTTTTCTACATAAAAAAA

TTTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACAGTCAGGGCTACA
CAGAAAAAAAACCAAAGAACTTCTCAAAACACTTCTCAAATCGTTTGATT
TTGAAAAATATTTAGTTAGCTGCATATTACCTTCCTGAGGTTTCCTATTA
CACTCGGTATAAAATCTACAATCTTCCTCATGTCCGACCAGGTACTCAGG
TCTAGGCACTTGCCTCCACAATGCCTCTCCCCCTTGTTAACTACCCCCAG
CTCCACTGGTTTCAACTTCACAGCCCAAACAAGTGAGGCACAGCATATTT
CTATTGTGTAGCAGCAGTTTCCTCAAAGCTTAAAACCTTCTGTCTTGGAG
GAAAGCACTTTAAGATACGAAGAGAAAAGGGGGGTGAAGGAAGGATATTT
TGGGGGGGAGGTTGTGTNNNNNNNNNNNTNNNNTNNNNNNNNNNNNNNNN
GNNTNNNTNNTGNNNNNNNGNTTTTTTTNTNNTTTTTTTTTNTTTTNTTT
TNTTTTTTTGTTNTTTTTTTTTNTTTTNTTTTTTTTTTTTTTNNTTGTTT
TTTGTTGGNNGTTTTTNNGTTTTGTGTTTGTTGTTTTGGTGTGTTGTGTN
TTTGTTGTGGGTTGGTGTGTGGTGGGTTTTTTTTTGTGTTTTGTTTGGGG
GTGTTTTGGTGGGGTTTTGGNTTTTTGGTTTGTGTGGTG

Query= MSMg01no485_f03.b1 MSMg01no485_f03.b1 CHROMAT_FILE:
MSMg01no485_f03.b1 PHD_FILE: MSMg01no485_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:13 2005
         (304 letters)



>mm_chr5_111131663_111132367
          Length = 705

 Score =  524 bits (271), Expect = e-153
 Identities = 295/305 (96%), Gaps = 5/305 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgcaaaataacaaaaa----gtctgacttggccatgcacgttactgccacatc 60
           |||||||||||||| || |||||    |||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcttgcaaaaaaaaaaaaaaaatgtctgacttggccatgcacgttactgccacatc 261

                                                                       
Query: 61  tgatagcatgctgttctcagccctgacatcccctaaagcttactttattaaagataacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgatagcatgctgttctcagccctgacatcccctaaagcttactttattaaagataacca 321

                                                                       
Query: 121 agaaaagtgactctcactggggatttgctgcctctatttgagtgtcttattaatgtagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaaaagtgactctcactggggatttgctgcctctatttgagtgtcttattaatgtagtt 381

                                                                       
Query: 181 gtgctcactgaaaacaaggacactccgaacattctcaagaacacagcttttactgggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgctcactgaaaacaaggacactccgaacattctcaagaacacagcttttactgggcag 441

                                                                       
Query: 241 tggtggtgcacgcctttaatcgcaccacttgggaggcagaggc-ggtggatttttgagtt 299
           ||||||||||||||||||||| ||||||||||||||||||||| |||  |||||||||||
Sbjct: 442 tggtggtgcacgcctttaatcccaccacttgggaggcagaggcaggtaaatttttgagtt 501

                
Query: 300 cgagg 304
           |||||
Sbjct: 502 cgagg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 705
Length adjustment: 9
Effective length of query: 295
Effective length of database: 696
Effective search space:   205320
Effective search space used:   205320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_f03.g1 MSMg01no485_f03.g1 CHROMAT_FILE:
MSMg01no485_f03.g1 PHD_FILE: MSMg01no485_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:14 2005
         (385 letters)



>mm_chr5_111275127_111275911
          Length = 785

 Score =  729 bits (377), Expect = 0.0
 Identities = 383/385 (99%), Gaps = 1/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagacagtcagggctacacagaaaaaaaaccaaagaacttctcaaaacacttctcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 caagacagtcagggctacacagaaaaaaaaccaaagaacttctcaaaacacttctcaaat 411

                                                                       
Query: 61  cgtttgattttgaaaaatatttagttagctgcatattaccttcctgaggtttcctattac 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 410 cgtttgattttgaaaaatatttagttagctgcgtattaccttcctgaggtttcctattac 351

                                                                       
Query: 121 actcggtataaaatctacaatcttcctcatgtccgaccaggtactcaggtctaggcactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 actcggtataaaatctacaatcttcctcatgtccgaccaggtactcaggtctaggcactt 291

                                                                       
Query: 181 gcctccacaatgcctctcccccttgttaactacccccagctccactggtttcaacttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gcctccacaatgcctctcccccttgttaactacccccagctccactggtttcaacttcac 231

                                                                       
Query: 241 agcccaaacaagtgaggcacagcatatttctattgtgtagcagcagtttcctcaaagctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 agcccaaacaagtgaggcacagcatatttctattgtgtagcagcagtttcctcaaagctt 171

                                                                       
Query: 301 aaaaccttctgtcttggaggaaagcactttaagatacgaagagaaaaggggggtgaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aaaaccttctgtcttggaggaaagcactttaagatacgaagagaaaaggggggtgaagga 111

                                    
Query: 361 aggatattttgggggggaggttgtg 385
           ||||||||| |||||||||||||||
Sbjct: 110 aggatattt-gggggggaggttgtg 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)