NGAGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACACCTTGCCCCTAATCTAGGCTTGTTTCCCACCTAGCTGGC
AACTCACACATTTATACTATTCTATGTCCTTCAAGTGGCTGGTTACCTCT
CCTCATTTTCATACATCCAACTTTCTTCATATCTTGGTGGCAAATCTCCT
ACACCTGACTCCTTCCCAGAGTCCCCCTCTCTCTGCCAGATGTCCCAGCC
ATTCTCTTACCATTCAGCTCTTTATTAACAGGTGATACTTTTACACATTG
CACAAGAGATTATCCCTACACCTCCCCAAGCTATTTTTTGGTCATGGTAT
TTCTCACAGAAACAGAATCCTAACAGAGAGGCTGGAGAGATGGCTCAGTG
TTTAAGAGCACTGACAGCTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCA
ACTACATGGTGGCTCGCAATCATCTGTAATGGGATCTGATGCCCTCTTCT
GATGTGTCTGAAGTCAGTTAAAGTGTACTCATAAACATTAAAAAATAAGT
AAATCTTAAAAAAAAAGAGAGAGAGACATGAAAGAAGGAAAGGAAGAAAG
AAAGAAAACCTAACAAAGACATGTGAATAAGAGCCTTAGTGGTTTCTCCT
CTCACAAACAGAGCACTTAATTCATTCAGCTAGGGTTTCTTGAGCACGAC
TTATGTGGTGAGCTAGGCTGCAAGCTAGAACCAGGGCTGCAAN

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCAGGTAGATGTTTCTGCCTC
GGTCCCCGTTCTGTTCCTTGTTCCTATTGGTGCCTTCACCCCAATGTCTT
CTGCTACCACAGTCTTCTCAGACCTTGCCTTGGCCGTTAGAGAGGCTGCC
TCCAGAGCTGTCTTCTAGCAAAGCTGCTGTCCCCAGACTATGCTTGAGAC
ATCTTGCCCTTTCTTCTCAGCAGGTCACCCTCTCCTATCTACTAGCGAAT
GAGTGCGTGTGCACTTTAAGAACATTTCAACCCTCTTTCTTCTCTGCTCC
TTCTTGATATAGCATGTGCTGCAACATGCAGAGCAAGCAGGCCTGGGTAA
CCTTTGGAGAACTTTGAACACAGCTCAGGAGAAAAAAAATGGCCCAGAGA
GAACATAAATCTGGGAGCTTGGAAACAGAAAAGCAGCGTTGGACAGAGAG
CAGCCGTAACATTAAGAAGGAAAAAAGCCAGAAGGCTTTCCACAGTGTGT
GTCACAGGCAAGTCATCTCACTCAAGGACCGAAGTCCAGCCAGCAAGCAA
GATACAGGATGCACCGTCCAATCCCAGGCTTTAAACACTTTTAAAATTTA
CATTTATGCGGTTTGTAAGGGGTGAGGCAGGTACACCGTAGTGCGTGTGT
AGAGGTCAGAGGACAACTTGCAGTGTCCTAGGGATTTGAGCCAGN

Query= MSMg01no485_g01.g1 MSMg01no485_g01.g1 CHROMAT_FILE:
MSMg01no485_g01.g1 PHD_FILE: MSMg01no485_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:18 2005
         (629 letters)



>mm_chr5_52992603_52993632
          Length = 1030

 Score = 1164 bits (602), Expect = 0.0
 Identities = 623/630 (98%), Gaps = 1/630 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcaggtagatgtttctgcctcggtccccgttctgttccttgttcctattggtgcctt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 830 cagtcaggtagatgtttctgccttggtccccgttctgttccttgttcctattggtgcctt 771

                                                                       
Query: 61  caccccaatgtcttctgctaccacagtcttctcagaccttgccttggccgttagagaggc 120
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 770 caccccaatgtcttctgctgccacagtcttctcagaccttgccttgtccgttagagaggc 711

                                                                       
Query: 121 tgcctccagagctgtcttctagcaaagctgctgtccccagactatgcttgagacatcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgcctccagagctgtcttctagcaaagctgctgtccccagactatgcttgagacatcttg 651

                                                                       
Query: 181 ccctttcttctcagcaggtcaccctctcctatctactagcgaatgagtgcgtgtgcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ccctttcttctcagcaggtcaccctctcctatctactagcgaatgagtgcgtgtgcactt 591

                                                                       
Query: 241 taagaacatttcaaccctctttcttctctgctccttcttgatatagcatgtgctgcaaca 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 590 taagaacatttcaaccctctttcttctctgctccttcttgacatagcatgtgctgcaaca 531

                                                                       
Query: 301 tgcagagcaagcaggcctgggtaacctttggagaactttgaacacagctcaggag-aaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 530 tgcagagcaagcaggcctgggtaacctttggagaactttgaacacagctcaggagaaaaa 471

                                                                       
Query: 360 aaaatggcccagagagaacataaatctgggagcttggaaacagaaaagcagcgttggaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaaatggcccagagagaacataaatctgggagcttggaaacagaaaagcagcgttggaca 411

                                                                       
Query: 420 gagagcagccgtaacattaagaaggaaaaaagccagaaggctttccacagtgtgtgtcac 479
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gagagcagccgtaacagtaagaaggaaaaaagccagaaggctttccacagtgtgtgtcac 351

                                                                       
Query: 480 aggcaagtcatctcactcaaggaccgaagtccagccagcaagcaagatacaggatgcacc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aggcaagtcatctcactcaaggaccgaagtccagccagcaagcaagatacaggatgcacc 291

                                                                       
Query: 540 gtccaatcccaggctttaaacacttttaaaatttacatttatgcggtttgtaaggggtga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gtccaatcccaggctttaaacacttttaaaatttacatttatgcggtttgtaaggggtga 231

                                         
Query: 600 ggcaggtacaccgtagtgcgtgtgtagagg 629
           ||||||||||||||||||||| ||||||||
Sbjct: 230 ggcaggtacaccgtagtgcgtatgtagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space:   631380
Effective search space used:   631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)