BAC Information

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BAC

Clone NameMSMg01-485I17
Chromosome5 (Build37)
Map Location 127,691,247 - 127,691,580
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040327
Downstream geneTmem132c, Slc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485I17.T7 (MSMg01no485_i17.b1)MSMg01-485I17.TJ (MSMg01no485_i17.g1)
ACCAG564963AG564964
length1,804714
length of high quality
(start - end)
---342 (336 - 677)
definitionCHROMAT_FILE: MSMg01no485_i17.b1 PHD_FILE: MSMg01no485_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:31 2005CHROMAT_FILE: MSMg01no485_i17.g1 PHD_FILE: MSMg01no485_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGTGGTNNTGGGTTGNGTAGAGGCGATGCCATATGGCCGACTACACGGC
ATGTCACACACACTGACGAGACACAGACTTCTATCCCTCCTCTAGCGCAG
ANATGGTGATGTCACGGTNGGCGGGNTGACGTCTGCGTATATATGTCGCT
CTTCGTCTCACCGACAACACGCCAAGGTCAGCGAGGATCACGCGCGCCAC
ATCCAGTTGATCATCGTCGCGCTGCTCTGGCCCTCGGCCTGCGTCTGCGT
NCGNTAATGTACGGCGNATCGANGTGTGCGATGACGCCCTCACGTGAGCG
ACTTGAGCTGCTATAGAGAGAGCGTGCNGTGNGCTCTGTGCGTTGAGAGC
ATCACCTCCCTCTGGTGATGTGACGCCTGTAGCCGAGTANCNGTTGTGGT
GCGANCGCGCAGCTTATAGAATCACGGTAAGAGCACGACGGNACTAGTCT
AGAATCACGCGTATAGATCCACGTATATATACACGACCGANACCAACCAC
TAGCGCTAGCGATAGCGCGCAGAGACGATGACNGACGAACGCGAGTCCTA
CCTAGTCGCGACGTGTGCGNGCGCATGTGTGTCTTGCTCGCACTGTGCAT
CTACATATATTAATCTCTCTATGATACACTATCAATCCAGCGAGTGAGAT
GATTCGTGCATCTCGCTTGATGAGGTGAGTAGCTGACGACACGAGNATAT
ATATAGAGACGATAGTATTGCGTAGTCACTACTCTCGCTACTGCAGCGCG
TGCGCGCCGCTCTNATAGTTACGCGANCTACTATCGTGTCATGTATGTAT
GTCTGCTATATGTGAAGTGTAGTGTGCTGTCTACACATCTCTCGCGGCGT
CGTCGCGCCCCCTCTAATCTGTATGTGTANATGCGTATCTCATACTTATC
GATCTCCTAATATCTGATCGCGCGAACGTTGCATAGCACGCCAGCACTNC
ATATGTGAATCATAGGACAGAATCAGATAACATCATAAGACACACGACTC
TGCGACACGCNCTGAGCTCGACTCGTACGTACATCGAAGNCACTAGACAC
AGTCCANACTACCACTCACANGATCATGCAGACAATGCACGCGCGTACAT
ATCNATCTTCACATATCTCGATGCTGCTATTTGTTATNANTATGACAGGT
CGACATACCTGAAATCGTANCATANTCGCGTCTAATATCAGCAGTATGCA
GGACCACGACACGNCATGTCTCGATTATATATCATCGCTCGTGCCGNCGC
CGTGCTATCTCGCAGTTAGATGCCTCACACTGCGCGANGACGTACTGAAG
AGTAGNTGAGCGACAGCCGCAGCTATCGCAGNCAGAGTGACTTATAGANT
GACAACNGACGCGTGTAANTGCTATCGTATGTCCTCACTCGTATCCCACT
ATATGCACTATNANATGCATCATANCTACATACATACATCATACGNACAC
CATCACAGCTGATGACTAGTGCGNCAGCGATACTNCGACACATGCTCGTG
CGCGACACCATCGTCGTCGATGACAGTGTCNCNGATATGCGCGCACCGAC
ACGTCTCTGANACTACGATGTGTTGCGTAGNTATACGCATTCGTATCGCG
AGTGTATTGCACNGCTGACGCGTTNNAGTGTCGTGTCTCGACGACNACTA
CCTNTCTGTAGTGTGTCACCNACACANCTCNCACCGTGCAGACTACTAGT
CGTCACTCTCACTGTCTAACGAGCGACATTCTANTATATTAGACTGAACT
ANTGTACGAGTCATCATGTGATGGCGGAGAGGTAGATGCAGTGGTANCAA
CATG
TCTTTTTACACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAATCGATAAGAAAGCAGGCT
GAACAAGCCATGGGGAGCAAGCCAGTATGCAGCATCCCTCCATGGCCTCT
GCATCAGCTGCTGCCTCCAGGTTCCTGCCCTGCTTGACTTCCTTCAATGA
TGAAGTGTGAGCTAAGTAAATCCTTTCCTCTCCGAGTTATTTTTTAGACA
TGGTGTTTCGGCGAAGCTATAGAAACTTTTAACTTTAAGACAGAAGGATT
GGGGAGTTTGGAACTTTGGGGTACCCCTTTTTTTTAACACTTGTGTAATG
AAGTATCCACAGCAGGATAGATCTGCGGAGAGGGCAGGACAGCCTCAGTG
GTTATGCTAGGAGAAGAGACAGGATGAGAGGATTGCCTGAGTGGTCCAAG
TATGTAACTCCTGACTGCACAGGACTTCCCCAGCCTCACATCCCAGCTAT
TGTATGCATCTACTGCATACACCACTCAGCTCAACATCGTGCTTATGGCC
ATCTCCCTCCAGACGTTGCCCAGGTGTGACGATCTCTTTCAAGATGCCTG
AAGCATCTTGTCATTTCTTTATTTTTCTTTCCATTTCTTCTTATTGATAA
GATTAACCAACAGCCTACAACCTGGCTTAAAGTGGAGGGAAGAATGTGCC
CCCTCATCTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_i17.g1 MSMg01no485_i17.g1 CHROMAT_FILE:
MSMg01no485_i17.g1 PHD_FILE: MSMg01no485_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:32 2005
         (342 letters)



>mm_chr5_127691047_127691788
          Length = 742

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacacttgtgtaatgaagtatccacagcaggatagatctgcggagagggcaggacagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aacacttgtgtaatgaagtatccacagcaggatagatctgcggagagggcaggacagcct 475

                                                                       
Query: 61  cagtggttatgctaggagaagagacaggatgagaggattgcctgagtggtccaagtatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 474 cagtggttatgctaggagaagagacaggatgagaggattgcctgagtggtccaggtatgt 415

                                                                       
Query: 121 aactcctgactgcacaggacttccccagcctcacatcccagctattgtatgcatctactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aactcctgactgcacaggacttccccagcctcacatcccagctattgtatgcatctactg 355

                                                                       
Query: 181 catacaccactcagctcaacatcgtgcttatggccatctccctccagacgttgcccaggt 240
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 354 catacaccactcagctcaacatcgtgctcatggccatctccctccagatgttgcccaggt 295

                                                                       
Query: 241 gtgacgatctctttcaagatgcctgaagcatcttgtcatttctttatttttctttccatt 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gcgacgatctctttcaagatgcctgaagcatcttgtcatttctttatttttctttccatt 235

                                             
Query: 301 tcttcttattgataagattaaccaacagcctaca 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tcttcttattgataagattaaccaacagcctaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)