Query= MSMg01no485_o11.b1 MSMg01no485_o11.b1 CHROMAT_FILE:
MSMg01no485_o11.b1 PHD_FILE: MSMg01no485_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:02 2005
(573 letters)
>mm_chr5_10301065_10302039
Length = 975
Score = 909 bits (470), Expect = 0.0
Identities = 545/572 (95%), Gaps = 7/572 (1%)
Strand = Plus / Minus
Query: 7 attcaaaag---atttcgtatgaagctcaaatcctcccactatatcccttcttctagcgg 63
||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 790 attcaaaagaacatt--gtatgaagctcaaatcctcccactatatcccttcttctaatgg 733
Query: 64 accactagaaacaggaattataggcctgtaaatggaatactaacacatgggccttgggca 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 accactagaaacaggaactataggcctgtaaatggaatactaacacatgggccttgggca 673
Query: 124 gactttattacctcaaatatagcaatggcttatcagttaacct-gtttttttttcacatg 182
|||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 672 gactttattatctcaaatatagcaatggcttatcagtttacctggtttttttttcacatg 613
Query: 183 cttaaaaaaggtgttttgttttactaatgtccaacag-gaaaaaattttaagagaataaa 241
||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 612 cttgaaaaaggtgttttgttttactaatgtccaacagaaaaaaaaatttaagagaataaa 553
Query: 242 atgaatatgaaattatcttagaaactatttgttaaatatgttgtgtttgattgtttcaga 301
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 552 atgaatatgaagttatcttagaaactatttgttaaatatgttgtgtatgattgtttcaga 493
Query: 302 tcttcacgttctttggcaataattttacttcataaaaaatgtatggccaatactttattt 361
||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 492 tcttcacattctttagcaataattttacttcataaaaaatgtatgaccaatactttattt 433
Query: 362 agcaatgcactgaaattggaatcaaatttaagtacaactatttactcaaaggaaataccc 421
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 432 agcaatgcactgaaattggaatcaaatttaaatacaactatatactcaaaggaaataccc 373
Query: 422 aggtaagaatttccacaaaaattgaactatgctgctatatcagaaagagatattttaatc 481
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 372 aggtaagaatttccacaaaaattgaactatgctgctatgttagaaagagatattttaatc 313
Query: 482 ttctcctattagaataatttgtacaatggcattaaaaatatttttgttaaacattatcca 541
| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 312 tccttctattagaataatttgtacaatggccttaaaaatatttttgttaaacattatcca 253
Query: 542 ttctaaaacactgtttctggccttcagtacca 573
||||||||||||||||||||||||||||||||
Sbjct: 252 ttctaaaacactgtttctggccttcagtacca 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 975
Length adjustment: 10
Effective length of query: 563
Effective length of database: 965
Effective search space: 543295
Effective search space used: 543295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_o11.g1 MSMg01no485_o11.g1 CHROMAT_FILE:
MSMg01no485_o11.g1 PHD_FILE: MSMg01no485_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:02 2005
(565 letters)
>mm_chr5_10270382_10271346
Length = 965
Score = 1029 bits (532), Expect = 0.0
Identities = 553/565 (97%), Gaps = 8/565 (1%)
Strand = Plus / Plus
Query: 1 tcaaagattggctggactgccaatctagttgaatcagtgagaaacactctttcaaaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcaaagattggctggactgccaatctagttgaatcagtgagaaacactctttcaaaatag 268
Query: 61 atttacagtgatcaaagaatcattgctgccctttacacacacacacacacacacacacac 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atttacagtgatcgaagaatcattgctgccctttacacacacacacacacacacacacac 328
Query: 121 acacacacgagcactgttaagttactgtgaggatctattgagaattcacaaagaatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 --------gagcactgttaagttactgtgaggatctattgagaattcacaaagaatttaa 380
Query: 181 aaactgccttgttactgatatccttaaatctccaaataagtgacatttaaatactgtccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactgccttgttactgatatccttaaatctccaaataagtgacatttaaatactgtccc 440
Query: 241 atagaatattataagtaaattttgttgatctctgagacacacttaaacttcaaaatttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagaatattataagtaaattttgttgatctctgagacacacttaaacttcaaaatttta 500
Query: 301 tattttaaatgtgcttagagtttctgtacttcccagatacagtttgtgggataccatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttaaatgtgcttagagtttctgtacttcccagatacagtttgtgggataccatata 560
Query: 361 tccaaataggacttgctgtacatattctagcaacttaaagaaactctgttcttaaccaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaaataggacttgctgtacatattctagcaacttaaagaaactctgttcttaaccaga 620
Query: 421 aagttaaattttaattttttcccttgaaaaaaaactatcgcgtcatatccacgtggttat 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 aagttaaattttaattttttcccttgaaaaataactatcgcgtcatatccacgtggttat 680
Query: 481 tgttcctgatttctctgcactggtacaatccataatggacatgtataaatcagtgaaaag 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tgttcctgatttctctgcactggtacactccataatggacatgtataaatcagtgaaaag 740
Query: 541 aacaaagaanagtaaaaaccatatg 565
||||||||| |||||||||||||||
Sbjct: 741 aacaaagaaaagtaaaaaccatatg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
