BAC Information

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BAC

Clone NameMSMg01-485O23
Chromosome5 (Build37)
Map Location 93,344,902 - 93,505,036
singlet/doubletdoublet
Overlap geneShroom3, LOC623798, Ankrd56
Upstream geneRchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik
Downstream geneSept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485O23.T7 (MSMg01no485_o23.b1)MSMg01-485O23.TJ (MSMg01no485_o23.g1)
ACCAG565261AG565262
length730751
length of high quality
(start - end)		336 (335 - 670)393 (85 - 477)
definitionCHROMAT_FILE: MSMg01no485_o23.b1 PHD_FILE: MSMg01no485_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:04 2005CHROMAT_FILE: MSMg01no485_o23.g1 PHD_FILE: MSMg01no485_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,504,701 - 93,505,036)(93,344,902 - 93,345,292)
sequence
GTGGGGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ACCGCGGAATTCAGGATAGTTCAAGAAGAGATTTGGCCTGGGCTTGGATG
CATGAAGCTGAAAAGAGGTCACTAACCATGTTGAAGGCATAGAATAGTTT
AAATGGTTAAATAAGTTACGAGCTAGTCAGGGGACGAGCCAAAGCTTGTG
GCCTAGGCATTTAGTAATAAATAATTAGTCTCAGAGTTGTTATTGTTGGG
AAATAAATGGCCAAGAGGGAAAACAGATTTATTTCTTAACAGTTTTAGAT
TGCCTGCTACGATGGACTGCAACCTGTTTCTATGAGCTAAAATAAATCCT
TTCTCCTGAAAGTTGCTTTTACCACAGCGACAGAAATGGAACTAGGACCA
CATGTTTTATATCTTTCATTTGTATTACTATATTGCTGCGTAAAGTTGGA
TTCTGAGTGCCCTTCACAGGTTCACTGCTAAATTCCTGGCTCCCATTCAC
CACCGCTTAGAGGTAGGAGAACCTTCCCAAGATGGAGCCTGGTGGCAGGT
CATCTGGGAAAAAGAGATTGCAGGATCCCAGGCTCTTCCTTCTGACCCTT
CTTTTGCTTTCTGGGACTGTGACAAGTAGCTCTGCTCTACCACATGTCCC
AGTCATGGTGGCTGCTTCACCTCANGCTCAGAGGCAATGGAGCCAACCAA
CTCTAGCCTCAGACCTCCAAAACTCTGAGC

TCCCTTTTNCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCATTAGAACAG
ATGCATTTACCTTTAATGGTCTCTGGCCTTTAAAAATCCTTAAAAGATGA
GATGATCCCAAGTGCCCCCTGCTTGTGCCTTTCTCCCATTGGCTTATTCT
TCCTGCCCAACCATACATAGCCTGTGACGTCCACAGCCAGTGGCTCTCTA
GCTCTACGTGTGTCCGGGATAGGGAATGGGAAAAGAAGAAGAACCGAACT
TTAATTTAGAACCTTAGCCACTGTACAGAAAGGGCAGAGCCGACAATCAC
GGTTTAAGTAAAAAAACCGAGGAAGTTATTAAATGCCACAAAGGCTCTCT
CTGAAAGACCCAGCTGTGGTTGTTTCTCTCCAAAACAGGGAGACCTGGAA
AGGAAAAATCCAGCCCCCTGCCGTAAAGGGCGAGATGCCAGTGGGTGGTC
CTGAAGGGTCCTTCCTTTGTTTGACTTTACCTTTTTGAAATTGCATTCAC
GTGTGTGAGAGAGAACATAGACCACTTTGCAGGAGTTGACGCTCTCCTCC
TACCGTCTGTGTCCTGGGAATGAAACTAAGGTCATCAGGCCCAGCTGCAA
GCTCGTCTCCAGCTTGCTGACTGAGCGTGCTCTCTACATTCATAAAATCT
CTGCATTAAGGTGTTGGGTGGGGAGACTCCTTTGAGTCTAGTTTGCACCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_o23.b1 MSMg01no485_o23.b1 CHROMAT_FILE:
MSMg01no485_o23.b1 PHD_FILE: MSMg01no485_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:04 2005
         (336 letters)



>mm_chr5_93504437_93505172
          Length = 736

 Score =  611 bits (316), Expect = e-179
 Identities = 331/336 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctaaaataaatcctttctcctgaaagttgcttttaccacagcgacagaaatggaacta 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 600 agctaaaataaatcctttctcctgtaagttgcttttaccacagcgacagaaatggaacta 541

                                                                       
Query: 61  ggaccacatgttttatatctttcatttgtattactatattgctgcgtaaagttggattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggaccacatgttttatatctttcatttgtattactatattgctgcgtaaagttggattct 481

                                                                       
Query: 121 gagtgcccttcacaggttcactgctaaattcctggctcccattcaccaccgcttagaggt 180
           |||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||
Sbjct: 480 gagtgcccttcacaggctcaatgctaaatccctggctcccattcaccacctcttagaggt 421

                                                                       
Query: 181 aggagaaccttcccaagatggagcctggtggcaggtcatctgggaaaaagagattgcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aggagaaccttcccaagatggagcctggtggcaggtcatctgggaaaaagagattgcagg 361

                                                                       
Query: 241 atcccaggctcttccttctgacccttcttttgctttctgggactgtgacaagtagctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atcccaggctcttccttctgacccttcttttgctttctgggactgtgacaagtagctctg 301

                                               
Query: 301 ctctaccacatgtcccagtcatggtggctgcttcac 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctctaccacatgtcccagtcatggtggctgcttcac 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_o23.g1 MSMg01no485_o23.g1 CHROMAT_FILE:
MSMg01no485_o23.g1 PHD_FILE: MSMg01no485_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:05 2005
         (393 letters)



>mm_chr5_93344702_93345494
          Length = 793

 Score =  733 bits (379), Expect = 0.0
 Identities = 388/391 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttcattagaacagatgcatttacctttaatggtctctggcctttaaaaatccttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttcattagaacagatgcatttacctttaatggtctctggcctttaaaaatccttaaa 260

                                                                       
Query: 61  agatgagatgatcccaagtgccccctgcttgtgcctttctcccattggcttattcttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgagatgatcccaagtgccccctgcttgtgcctttctcccattggcttattcttcct 320

                                                                       
Query: 121 gcccaaccatacatagcctgtgacgtccacagccagtggctctctagctctacgtgtgtc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gcccaaccatacatagcctgtgacgtccacagccagtggctctctagctctaggtgtgtc 380

                                                                       
Query: 181 cgggatagggaatgggaaaagaagaagaaccgaactttaatttagaaccttagccactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggatagggaatgggaaaagaagaagaaccgaactttaatttagaaccttagccactgt 440

                                                                       
Query: 241 acagaaagggcagagccgacaatcacggtttaagtaaaaaaaccgaggaagttattaaat 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaaagggcagagccgacaatcgcggtttaagtaaaaaaaccgaggaagttattaaat 500

                                                                       
Query: 301 gccacaaaggctctctctgaaagacccagctgtggttgtttctctccaaaacagggagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 gccacaaaggctctctctgaaagacccagctgtggttgtttctctccaaaagagggagac 560

                                          
Query: 361 ctggaaaggaaaaatccagccccctgccgta 391
           |||||||||||||||||||||||||||||||
Sbjct: 561 ctggaaaggaaaaatccagccccctgccgta 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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