Query= MSMg01no486_h08.b1 MSMg01no486_h08.b1 CHROMAT_FILE:
MSMg01no486_h08.b1 PHD_FILE: MSMg01no486_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:46 2005
(691 letters)
>mm_chr5_84296100_84297190
Length = 1091
Score = 1208 bits (625), Expect = 0.0
Identities = 672/688 (97%), Gaps = 2/688 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgggcctagcgtatcaccgattgagaggtcctttcaactgagagaaatatcta 64
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcttgggcctagtttatcaccgattgagaggtcttttcaactgagagaaatatcta 264
Query: 65 gagatagaatcagaatgttcaataattttcaacagaatcctcaacagaaatctttcaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagatagaatcagaatgttcaataattttcaacagaatcctcaacagaaatctttcaaaa 324
Query: 125 atcttgttggttgaccaaatatttccctttctacccacagaatgagcatttttgtgtgta 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 atcttgttggttgaccaaatatttccccttctacccacagaatgagcatttttgtgtgta 384
Query: 185 agactggtcattagtgaaaacgaaatttcccacatgaaaccaaccct-caacagtctatc 243
|||||||||||||||||||||||||||||||||||| | ||| || | ||||||||||||
Sbjct: 385 agactggtcattagtgaaaacgaaatttcccacatggagccagcc-tacaacagtctatc 443
Query: 244 acatctgtaatttgcatgtgttttcttaaatttaattgtctaacattttaactaacttgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatctgtaatttgcatgtgttttcttaaatttaattgtctaacattttaactaacttgt 503
Query: 304 ttctaaagatatgtttttataacccatgttttatataggaaacaaaaggacactcatcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttctaaagatatgtttttataacccatgttttatataggaaacaaaaggacactcatcct 563
Query: 364 tttcttttatcccaagtaaatgtttacacaatgaacagtaataccatgaagtgtcagtga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttcttttatcccaagtaaatgtttacacaatgaacagtaataccatgaagtgtcagtga 623
Query: 424 agcttggctaaacttctagcttatgtaaataggtgtttctcacttttgtagaaaccgtgc 483
||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 624 agcttggctgaacttctagcttacgtaaaaaggtgtttctcacttttgtagaaaccgtgc 683
Query: 484 tgagatttataacctaatacatgattaaaatagtagttcatattgccatcaaagttcatt 543
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 684 tgagatttataacctaatacatgaataaaatagtagttcatattgccatcaaagttcatt 743
Query: 544 ttaaaatagtcatatatcatcaacattgatgctcanaacaaactaatctaatattagaag 603
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 744 ttaaaatagtcatatatcatcaacattgatgctcagaacaaactaatctaatattagaag 803
Query: 604 tctcacttctaaaggtttgcatgcatgctctactatgcgtctaatggttttaatttttct 663
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 804 tctcacttctaaaggttcgcatgcatgttctactatgcgtctaatggttttaatttttct 863
Query: 664 tttgtctgtcagaactgtatgtcacctg 691
||||||||||||||||||||||||||||
Sbjct: 864 tttgtctgtcagaactgtatgtcacctg 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_h08.g1 MSMg01no486_h08.g1 CHROMAT_FILE:
MSMg01no486_h08.g1 PHD_FILE: MSMg01no486_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:46 2005
(630 letters)
>mm_chr5_84476101_84477130
Length = 1030
Score = 1210 bits (626), Expect = 0.0
Identities = 629/630 (99%)
Strand = Plus / Minus
Query: 1 ttactaaagctgtgatgaatgattgacatgtactgattgattgaagtgtgtaaaggaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ttactaaagctgtgatgaatgattgacatgtactgattgattgaagtgtgtaaaggaaga 771
Query: 61 agtattgtaggcaatacacattttcccttgtgcaccttaattagtgtttcctcatatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 agtattgtaggcaatacacattttcccttgtgcaccttaattagtgtttcctcatatcat 711
Query: 121 ttcttgatgaaaagtctctagtctgtgagatttctctgggagataaaaccatgtaggaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttcttgatgaaaagtctctagtctgtgagatttctctgggagataaaaccatgtaggaat 651
Query: 181 acagaaagggaaatggaggaaaacacagtgtggtcatactgtacaagtcaggattttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 acagaaagggaaatggaggaaaacacagtgtggtcatactgtacaagtcaggattttctg 591
Query: 241 tccatgagggctcttcaataagactcgtgaatgcctcccagaaatgggactctggtgata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tccatgagggctcttcaataagactcgtgaatgcctcccagaaatgggactctggtgata 531
Query: 301 gagagtgtgtacatttgactcttaggatatatctcaaagtgattgaaagaaagcctcagg 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 530 gagagtgtgtacatttgactcttaggatatatcccaaagtgattgaaagaaagcctcagg 471
Query: 361 tgccttaatacaatgtacattcttatagatgaaaaagtttgtatgtgcttaggtttcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgccttaatacaatgtacattcttatagatgaaaaagtttgtatgtgcttaggtttcttc 411
Query: 421 aatgtttttaaaacagaaaataaagatatacaacacaatcaagggatctgcttttatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aatgtttttaaaacagaaaataaagatatacaacacaatcaagggatctgcttttatttt 351
Query: 481 tcatcatggttacatataacattagctaggtcaattcagtgtggcaactcagaataaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcatcatggttacatataacattagctaggtcaattcagtgtggcaactcagaataaatg 291
Query: 541 tgtgttgtttctgattcttgtatctctcagacttgtacaaatcccatactccaatgcata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgtgttgtttctgattcttgtatctctcagacttgtacaaatcccatactccaatgcata 231
Query: 601 aagatttacactgacctgcgactgatgatg 630
||||||||||||||||||||||||||||||
Sbjct: 230 aagatttacactgacctgcgactgatgatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
