BAC Information

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BAC

Clone NameMSMg01-486H14
Chromosome5 (Build37)
Map Location 83,831,163 - 83,831,804
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486H14.T7 (MSMg01no486_h14.b1)MSMg01-486H14.TJ (MSMg01no486_h14.g1)
ACCAG565669AG565670
length7271,414
length of high quality
(start - end)		631 (80 - 710)---
definitionCHROMAT_FILE: MSMg01no486_h14.b1 PHD_FILE: MSMg01no486_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:47 2005CHROMAT_FILE: MSMg01no486_h14.g1 PHD_FILE: MSMg01no486_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTTCCTTCCCATCTCCATAATGGTGCATTTTATTGT
AACAAGAATGGAATCATCAAAATTCAGAGTATTATTCAATGACACTCACA
ACTCGAGTCCTTGAAATTGCAAAAACCTATATCCAGATACACACACTGTT
TTGTCTATCATTTCACTCAACTCTGAGCTCAAATACTACCTTTATTTTAT
CTGCATATGTGAGTGCATACATATCTAAGAGCCTGAGGGAAGAGCTTGAA
GGAGTTTGATTGTGGTCCAGGAGATGTTTCTTAATTCATTTCTTCTGGAG
GCTTGCACATTGTCGAGTCATCTCACTATACCCCATTCAAATATCAAAGA
AGATTTCTTGATAGATGTTCATGGTATTCTATCATAGTTTCAAAACTCTT
GGATATTTTGTGTGTTTGTGTGTCTTTTGCAATATTTCTCTATCACTTGC
CATTTAGAACTATTGGTTGTATTTGTCTATAACTCCTCCTATTTCCATAA
GAAAAGAGAACCTGGTTTGTTTGTTTGTTTTTTCCTTTCACCCTGATATG
CTAGGACTTGAAGAAATTCAGTAAATATTTTTTGAACGACTAAATTTGCT
TCTCTTAGGAACGAATAAGCTTTATTTGAGTGTGTGGTATGAAGCTGAAT
GTTTCGTGATTAGAATGTTGTTTCAGN

CTCGCACCGCATCTCTCTCGAACATNTCTTCCTGCGTTGNGGTCGTTACT
TATCCTCCACCAATAGAGAGAGTAGANGAGAAGAATATATAATGCAAGTC
GCTCTCCCCCCCGCGCACACCAGCCACTCTCACCGCTCTATACATCTCTA
ATCACTTCTATCCCGGCGTCAACTCATCTCCTGGAGTATTTAGCCATCAC
TATATAAACTACTTCGTATCTCTAAGAATGCACCCTCGGCGATGATACAT
AACACGACCAATTAAACACATACGAGACACAACGCCTCATATTCATCAAC
CTCTCTCCCTACACGTCGCGCGTGTCTTCACATCCGTATTATGCCCTCTC
TGCGCGTGTCGGACGGTGAGAACTGGCGATTCTTGATTCGCGTGTAGTCT
ACACGCCGCGCCCCCGACCTCTATTATTCTCTCTCGCCGCGTCTATTTCG
TTAGCGCACTGTCGCGTGGTGGCCCGCGCGTCTCGTGCGCGTGAGCCGTC
GAGTGACTAGTTGCGATAACATCGCTCGCTGTCTCGCCGTGCGCCCGTCT
CCGCCCCTCGTTGGCCNGCGTCGTCGGTGCGCGCGTATGTAGTGTCTTTG
TGTCTAGTTGGGTGTCGCGGTGTCTCCGCGCTCTCGTGTATGCGTGCTAG
TTGCTTGGGTGTTGTTGTCGCNCCGTCCTGACGGCCCGCTTGCGTTTCTC
GTACGATACTATCGTACGCTCTCGCCCGCACGGCCGATATGCGCCGCGCG
CACAAAGCGCTGTAGCTNATATTAGCGGAGACGCAGCTAGCTACGCCCGC
CTAACGATATCACNCGTCTCGTGGCCTTATACGCGGCGAGATAATATTAT
TATATAGACAGAAACTCGTCAATCTCTTACTCGTGCGCGCCGCGACCCCN
GTGAGTCTAACCATCCTACGCGCGTGAGCGTATACTTACTAGTACTGCAC
ATTCTCGGCGCGCGTGCGNCTCGCTTGATATACGCACTCGAGATTTGTCA
ATGTCAGTGTGGTATGTGAGTGAACGTCGGTGCGCATCGCAAGACGATAA
TGTGGGTGAATTATCACATACCAATCAATATGAGCGCGGAACACCTGCGA
GATGATCTATGGCCGAATTGATACNAGTATGGGCGTAGCACGAAGAACCG
ANGTCGCGCTCGGCGAGTCCCACGCCGTAGTATTATTTGCGCTCCACGCA
CGCCACCACATACTATATAGTGATGGTGCGTCGCATACAGTCGATTATCC
ACAAGAACGCGTATGTGTGAGTGCGCACTGCGAGGCATATACGNTACCGC
TACGGCAGACAATCCGACGTATTCGTGGCGGTCTATACANCACACCGTTC
TCGACGCGCTACATCTAGTGTATACACACACATTCGGANTATGTATGTAA
CTCTTACACAACGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_h14.b1 MSMg01no486_h14.b1 CHROMAT_FILE:
MSMg01no486_h14.b1 PHD_FILE: MSMg01no486_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:47 2005
         (631 letters)



>mm_chr5_83830963_83832004
          Length = 1042

 Score = 1125 bits (582), Expect = 0.0
 Identities = 623/642 (97%), Gaps = 11/642 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataatggtgcattttattgtaacaagaatggaatcatcaaaattcagagtattattcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataatggtgcattttattgtaacaagaatggaatcatcaaaattcagagtattattcaa 260

                                                                       
Query: 61  tgacactcacaactcgagtccttgaaattgcaaaaacctatatccagatacacacactgt 120
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 261 tgacactcacaactcgagtccttgaaattgcaaagacctatgtccagatacacacactgt 320

                                                                       
Query: 121 tttgtctatcatttcactcaactctgagctcaaata---ctacctttattttatctgcat 177
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 321 tttgtctatcatttcactcaactctgagctcaaatattactacctttattttatctgcat 380

                                                                       
Query: 178 atgtgagtgcatacatatctaagagcctgagggaagagcttgaaggagtttgattgtggt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgagtgcatacatatctaagagcctgagggaagagcttgaaggagtttgattgtggt 440

                                                                       
Query: 238 ccaggagatgtttcttaattcatttcttctggaggcttgcacattgtcgagtcatc---- 293
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 441 ccaggagatgaaacttaattcatttcttctggaggcttgcacattgtcgagtcatccatc 500

                                                                       
Query: 294 tcactataccccattcaaatatcaaagaagatttcttgatagatgttcatggtattctat 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcactataccccattcaaatatcaaagaagatttcttgatagatgttcatggtattctat 560

                                                                       
Query: 354 catagtttcaaaactcttggatattttgtgtgtttgtgtgtcttttgcaatatttctcta 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catagtttcaaaactcttggatattttgtgtgtttgtgtgtcttttgcaatatttctcta 620

                                                                       
Query: 414 tcacttgccatttagaactattggttgtatttgtctataactcctcctatttccataaga 473
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 tcacttgccatttagaactattggttgtatttgtctataactcctccgatttccataaga 680

                                                                       
Query: 474 aaagagaacctggt----ttgtttgtttgttttttcctttcaccctgatatgctaggact 529
           ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagagaacctggtctgtttgtttgtttgttttttcctttcaccctgatatgctaggact 740

                                                                       
Query: 530 tgaagaaattcagtaaatattttttgaacgactaaatttgcttctcttaggaacgaataa 589
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 tgaagaaattcagtaaatattttttgaatgactaaatttgcttctcttaggaacgaataa 800

                                                     
Query: 590 gctttatttgagtgtgtggtatgaagctgaatgtttcgtgat 631
           |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 801 gctttatttgtgtgtgtggtatgaagctgaatgtttcgtgat 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1042
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1032
Effective search space:   640872
Effective search space used:   640872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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