GGGGGGGGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAA
TACGCGGAATTCCAAAGTAGTTCGCCTGACTCCCATCTGAGATTTGTCTT
TTTTTTTCTTTTCTTTCTTAGACAGGGTCTTCTAGAGCTCAGACTGGCTT
TACGCACACTTTGTAGCCAAGGCCGACCTTGGACTCCTGATTATCCCGCT
TCCCTCGTTTCCTGTGGATGCTGGGGCTTGAACTCAAGTCCTCACGCTTG
TACAACAGACGCTTTACACACTCACTTCCCAGCCCCGCCACTTACATTCC
TTAGTAGGTCTACCAAAATAGGCAGCAAGTTACTCAAAAGCTGCTCCACT
TGGTGTCTGGGCCCAGCGGCCACGTTGCTCATGGTCCAGGCAGCCAGCAC
CTGGATGGAGGTCTTCGGGTGCTTCAGGACCTGGCCCAACACCTTCAGCA
TGCCAGCATCGATAGCCATCTGGGTCTGTTCATCTGTTCCTGCCACAATG
TTGCCTATAGTGTGGAGACAAGGTATCTGGAAGGACAAAGAAAGGTGTCT
AAGGATTGCAAACTTGTCACTCTACAGTTAAGTCACACATTGAGTGCGGC
GCAAAGAGATGTGTGCAAATCTGTAGTGTTGTATTTGGTCAGCACACCCA
TAGCTGCTTTTAGGGTTTCAGGTGCTTGCTCACTGCTCCTGGTCATGGAG
GGTAGACGAGGGACACTTTTATTAGGAA

TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTACCCAGGCCGGCCCAAACGACGCGAAAC
GCTGTCTTATAAAGCGATGACAACACTGTGCAGCCAGGAGGTGATCTGCA
AGTGGGCTGCTGGGCTGGGTGGGTGTATTCACTGGGTAAAGGCACTTGCA
GCCAAACCTGACAACCTGAGTTCAATCCCTGGGAGCCATGTGATGGGAGG
AGAGACCTGACCCTCAGGTTGTTCTGTAATCGCCACATGCAGGCGTGGCA
CAGACGTGAACACACAGACAAGTAAACAGAAAAACAGTCTATGAAAGATT
AGCATAGAAGAAGCCAATTGCGGCCGCAGAGATGGCTCAGCGGTTAAGAG
CACTGACTGCTCTTCCAGAGGTCCCGAGTTCAATTCCCAGCAACCACATG
GTAGCTTACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGCGTC
TGAAGACAGCGAAAATGTACTCATATACATAAAATAAATCTTAAGAAAAA
AAAAAAAGCCAGTTGGCAAGCAATGTTTTCAGTCCACAAAATGCATAATG
CCCTCTCTGGCCCCACAAGCTAACGGTGAGCCACATGGGTACACTCTTGC
CTCAGACCTATGCTCAGAATGCTCCCTCAACTATAATGCTCTTCACTCAT
ACACAGACACACCCTTGCTCTGGCCCCACCCTGCCCTTTGGGCATATTCA
ATCTCAGCTCGGTTGN

Query= MSMg01no486_j24.b1 MSMg01no486_j24.b1 CHROMAT_FILE:
MSMg01no486_j24.b1 PHD_FILE: MSMg01no486_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:59 2005
         (627 letters)



>mm_chr5_145754297_145755323
          Length = 1027

 Score = 1181 bits (611), Expect = 0.0
 Identities = 623/627 (99%), Gaps = 1/627 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactcccatctgagatttgtctttttttttcttttctttcttagacagggtcttctagag 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 202 gactcccatctgagatttgtctttttttt-cttttctttcttagacagggtcttctagag 260

                                                                       
Query: 61  ctcagactggctttacgcacactttgtagccaaggccgaccttggactcctgattatccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagactggctttacgcacactttgtagccaaggccgaccttggactcctgattatccc 320

                                                                       
Query: 121 gcttccctcgtttcctgtggatgctggggcttgaactcaagtcctcacgcttgtacaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttccctcgtttcctgtggatgctggggcttgaactcaagtcctcacgcttgtacaaca 380

                                                                       
Query: 181 gacgctttacacactcacttcccagccccgccacttacattccttagtaggtctaccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacgctttacacactcacttcccagccccgccacttacattccttagtaggtctaccaaa 440

                                                                       
Query: 241 ataggcagcaagttactcaaaagctgctccacttggtgtctgggcccagcggccacgttg 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataggcagcaagttacacaaaagctgctccacttggtgtctgggcccagcggccacgttg 500

                                                                       
Query: 301 ctcatggtccaggcagccagcacctggatggaggtcttcgggtgcttcaggacctggccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcatggtccaggcagccagcacctggatggaggtcttcgggtgcttcaggacctggccc 560

                                                                       
Query: 361 aacaccttcagcatgccagcatcgatagccatctgggtctgttcatctgttcctgccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaccttcagcatgccagcatcgatagccatctgggtctgttcatctgttcctgccaca 620

                                                                       
Query: 421 atgttgcctatagtgtggagacaaggtatctggaaggacaaagaaaggtgtctaaggatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgttgcctatagtgtggagacaaggtatctggaaggacaaagaaaggtgtctaaggatt 680

                                                                       
Query: 481 gcaaacttgtcactctacagttaagtcacacattgagtgcggcgcaaagagatgtgtgca 540
           |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 gcaaacctgtcactctacagttaagtcacacattgagtgcggcgcagagagatgtgtgca 740

                                                                       
Query: 541 aatctgtagtgttgtatttggtcagcacacccatagctgcttttagggtttcaggtgctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatctgtagtgttgtatttggtcagcacacccatagctgcttttagggtttcaggtgctt 800

                                      
Query: 601 gctcactgctcctggtcatggagggta 627
           |||||||||||||||||||||||||||
Sbjct: 801 gctcactgctcctggtcatggagggta 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)