Query= MSMg01no486_m14.b1 MSMg01no486_m14.b1 CHROMAT_FILE:
MSMg01no486_m14.b1 PHD_FILE: MSMg01no486_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:11 2005
(541 letters)
>mm_chr5_53606882_53607822
Length = 941
Score = 1000 bits (517), Expect = 0.0
Identities = 535/545 (98%), Gaps = 8/545 (1%)
Strand = Plus / Plus
Query: 1 attttcatctggagcaattggggcacacttcagaaaactgacctagacactgtttggtcc 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttcatctggagcaatgggggcacacttcagaaaactgacctagacactgtttggtcc 260
Query: 61 tctaaaatgaccactgagtaactttgttgcccagggaatgagaatgggcttgcctgatga 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tctaaaatgaccactgagtaactttgttgcccagggaataagaatgggcttgcctgatga 320
Query: 121 ctcctatgttggaaaagggcagagaaaagtcaggaattcttcatatagagacttttggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctatgttggaaaagggcagagaaaagtcaggaattcttcatatagagacttttggtc 380
Query: 181 tagaagacatttactgcccaagcctctgctctagcagactgcttgaagggtatggcttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaagacatttactgcccaagcctctgctctagcagactgcttgaagggtatggcttta 440
Query: 241 tttctttt----gaaagcctcttatttggaaacaaatctgttttccccactgccttgtgg 296
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttc----agaagaaagcctcttatttggaaacaaatctgttttccccactgccttgtgg 496
Query: 297 aaggacttgaaactccatcatcacaattcattggtttgaattaagcttttatactccact 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaggacttgaaactccatcatcacaattcattggtttgaattaagcttttatactccact 556
Query: 357 aaaatccaaaggcccccaggaggaggctgtttgaatctggcctcccttgtgcctacctta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaaatccaaaggcccccaggaggaggctgtttgaatctggcctcccttgtgcctacctta 616
Query: 417 gtgtaagatagtttatcatctacccattaaggagacaggaagagaaaagcaaacccatac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtgtaagatagtttatcatctacccattaaggagacaggaagagaaaagcaaacccatac 676
Query: 477 ccaaccctgaccaaaaccaaggcaatcaaaggagtttgggtgacccagtaggagaagaag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccaaccctgaccaaaaccaaggcaatcaaaggagtttgggtgacccagtaggagaagaag 736
Query: 537 ccaag 541
|||||
Sbjct: 737 ccaag 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_m14.g1 MSMg01no486_m14.g1 CHROMAT_FILE:
MSMg01no486_m14.g1 PHD_FILE: MSMg01no486_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:11 2005
(673 letters)
>mm_chr5_53647519_53648588
Length = 1070
Score = 1216 bits (629), Expect = 0.0
Identities = 661/673 (98%), Gaps = 3/673 (0%)
Strand = Plus / Minus
Query: 1 ttccttcctaaattcctacttggatcatctgtgtctcaaaatttaccactgaaaaaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ttccttcctaaattcctacttggatcatctgtgtctcaaaatttaccactgaaaaaccaa 811
Query: 61 aaccagtttggactccctttaaaggtgatatcctctgtgttctaattagtctaattcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 810 aaccagtttggactccctttaaaggtgatatcctctgtgttctaattagtctaatacccc 751
Query: 121 cctcccccggcccccctgcagctccacctcttaaaggttccatcaccttccaacatggca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ---cccccggcccccctgcagctccacctcttaaaggttccatcaccttccaacatggca 694
Query: 181 atgcgaaggagctgcccctctcagaagcctgcgatcccaccttgctatatccgagcacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 atgcgaaggagctgcccctctcagaagcctgcgatcccaccttgctatatccgagcacct 634
Query: 241 ctgaggagcaaaataacaattctcccctgggttagatgtgctgaccctgtggccataacc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctgaggagcaaaataacagttctcccctgggttagatgtgctgaccctgtggccataacc 574
Query: 301 aagtcagcaaggaagatgggcccagaacaccgccaaaacccaaaagacaaagcttgtcat 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 573 aagtcagcaaggaagatgggcccagaacactgccaaaacccaaaagacaaagcttgtcac 514
Query: 361 ctcttccccagacagttatgggcggacctaattggagtctgcctctgggatttcacctcg 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctcttccccagacagtgatgggcggacctaattggagtctgcctctgggatttcacctcg 454
Query: 421 aaagctgaaagccaggatgggtgggggaggggcaggagctgatgcaggcttccagagagg 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaagctgaaagccagggtgggtgggggaggggcaggagctgatgcaggcttccagagagg 394
Query: 481 tgtggatgggagtcagagcaagctgggaagcaaaagctgtcacggagtagactagacggt 540
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 393 tgtggatgggagtcagagcaagctgggaagcaaaagctgtcacggagcagactagatggt 334
Query: 541 gaggaaagacctgggaatagcaagcagcggtggagaactgaggagaattagaccaaagac 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaggaaagacctgggaatagcaaacagcggtggagaactgaggagaattagaccaaagac 274
Query: 601 ccacaaatccctcctgctgaggaggaacaagataccttaagcccccagactactgcctgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccacaaatccctcctgctgaggaggaacaagataccttaagcccccagactactgcctgg 214
Query: 661 gattcaagtattt 673
|||||||||||||
Sbjct: 213 gattcaagtattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1070
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1060
Effective search space: 702780
Effective search space used: 702780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
