BAC Information

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BAC

Clone NameMSMg01-487D24
Chromosome5 (Build37)
Map Location 87,829,416 - 87,830,015
singlet/doubletsinglet
Overlap genenone
Upstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818
Downstream geneUgt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487D24.T7 (MSMg01no487_d24.b1)MSMg01-487D24.TJ (MSMg01no487_d24.g1)
ACCAG566259AG566260
length1,836802
length of high quality
(start - end)		---599 (75 - 673)
definitionCHROMAT_FILE: MSMg01no487_d24.b1 PHD_FILE: MSMg01no487_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:48 2005CHROMAT_FILE: MSMg01no487_d24.g1 PHD_FILE: MSMg01no487_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:48 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CACTCTGCCGTCGTGTTCTAATGATACTCTNTATATTCAGATTATCNTGA
CGCGACGTAGNTGCGTCCTCTGCAGTGACAGACGAGTGACGTATCTATTG
GCCGCGCGACGCAGCTCTCTCCTGCNACTAACTGTAGGAGCGACATATAT
GATCCCGTGTACGCGGAAGCACGACACAGCGAGAGAGTGAGTGTGGTGTT
GTCGGACTCTGTCCACACCACCTGTAGATGTATCTGTGTCCGGCAGGTCG
TGACGCGAGCGCGCGCCTAGGACTGAGCCACACGGATAACTAAATCCATA
CGGCGCACGCGCGAGGTGTGTGCGCAGCGCGTACGTCACCGATAAGCATT
GTTAATGCAACACGCACTAGTAAGCATCGACAATCTACGCATCGCCCATC
GATTCTGACGGCAGCGGCGTATGACAATGCTGCTACTTTGCGTGTATGAA
CACGCGAACAACTATGCATGTGATTTACGCCGACGGACGGTTGTGGCAGG
TGATCGCCACATGAGCAGCACTGGNGCTGGTGCGTGCTGCGAGTATGTGA
TAGGCGACAGTGATGAACCGCTATCGACGCGTGGAGACGCTGCGAACACA
GCTATTCGCGGCGTTGCGCGAGGTGATCGCATGCTGNTTCTGCGTTATTC
GCGCATTATAATACACTACGATAGCGCACGCGTCGCGCGTGGCGAGTCAT
GTCTGTGTGCGAGACACGCTCGCGATTGTATTTTANCGATGCTAGACCGT
GTGACTATGACATAAATGGTGGAGCATGACGAGCCATCATCCCACCGCGA
CTAATGCGCATACTGCGTATGTATGANATACACCACACACGTACCTNTGA
TCTATCGCGATCGGACGGACCGTGACGCGCTTAANTCACTTCTACTTGCC
GTCCCGCTGCGACTACCGCGCGCGAGTGTTACGCACACGCTTGTCTACGT
GTATACAGTATCCGTCCGCNCGTGCACCTACGCGGACTATGTGCTTCTAT
GTGCTGTGTAGAGTCGCGTGTAGATACTGATCTGCTCGTCGCGTGAAGAG
ATGCATANCATGCTGTGCACGATTGTGCGCTCTATNAGACGCACTATATG
CTAATAGTATAGTATCATNGCGCGCGCCACGCTACTCGCACAGATCGGTA
GATCATCTACGCTGTTCCACGCACGTGTCACACGCCTGAATGNACNCNTT
GCGCTGTGATGTCGCGCGTACAANTGACGTGATGCACTAGTGACGGTNTC
GCATCGATGNTATCGAGACNAGTCGTGNTGNTTTATTAGCGTATANTNAC
GCGTCGTCATGCTCGTCAGTCTGTGCTGCATACTCGCGAGCGATCNGCGC
TCGATATACTGTCGCTCNTTGCTCCCGNCGCATTTCGCCGTCCNACNACA
CGCACTACGTGATATATACTGTCATGACGCTACCATAGATNAACTCAATA
CTCTACCATACCCGCTTCGTCGACGATATGCCACTACGCAGCATGTGTNT
TTAGTATACTGANGCGTGTTTATACTACGCGCGCGTCTGCCTCGTNCCAT
CNTACTGTANCATGCATATGTATGCGCAACCCACGCNGCGTCNAGNGCGT
CGTGCGNGTTATGCGCACTATCGATGGTGTCGCGCGCATAGTAGGACTGC
ACGAACGCNCGCGTCANCAATATAGNCANTGANGNTAAANGATGAGNATG
NTAGTNCAGATGCAGANTATGTGCGCGAACGTACCGCGTACGAGCGTGAG
CGCGTCACTCGTCGCTGTACTGCCGAGCTGNTANCGCATGACGCGCGGAC
ATGCGCCCCAGCGATGATGTCCTCCGTCTNATCTAN

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGACCAATCTCATAAAAAGATCAT
TATCTATATGTCTACAATAAACTTCCTTTGAGACTGATACAATTAAGGAT
CATTTTAAAAAATTGTAGGTGATTAAGGAGATGGTTTTCAACTAAATAAA
TATTCAAAAACAATATCTAGAAAACTACTTTTGGTGTTCTGTATGAAGTA
ATTCATCTGACTCTTTTTCACATCAGAATCTCTTTGACTCATATTTTATT
TCTTCCTTGAATGGTAGGATTTTCACTCTGACTGATTAGAAGCAGAGTCC
TGTGATTCTTGTTTTCTTTTGCATAATGATGATCATAAGGGCAGTACCCA
TCTCTACATTTCCTTTAGATATTTCTTCTACAAATACTGACAAGGTAAGT
CAGAAAGATAGGTTCATTTTTCTCCTTTTCTTAGTTAGCCAGTTAGTACT
CTAGCCTTGGAATTCCTTTCTTTAAACGGTGCTCTCAACTGCACTCTGAT
AAGATCCACCTCAAAATTAGGATACAGATTTATGCTTCATTTCAAACATT
TTCAATACTTGCTTAATGTTCTTCTACTAAAAAAAATAATATAAATTAAC
TCTCCCCTGAAAAATCTTACATGTGCAGTGAATTAAATAATCAACAAATG
GAGCAAATAACTCTAAAGGATTTTCTATGTCTACACAGCTTTGACAGTGA
TGTCATCATAATGTCAGCATTTTTAAATTTGTTCACAGAGATCACAACAT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_d24.g1 MSMg01no487_d24.g1 CHROMAT_FILE:
MSMg01no487_d24.g1 PHD_FILE: MSMg01no487_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:48 2005
         (599 letters)



>mm_chr5_87829216_87830214
          Length = 999

 Score = 1137 bits (588), Expect = 0.0
 Identities = 597/600 (99%), Gaps = 1/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagaccaatctcataaaaagatcattatctatatgtctacaataaacttcctttgagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaccaatctcataaaaagatcattatctatatgtctacaataaacttcctttgagac 260

                                                                       
Query: 61  tgatacaattaaggatcattttaaaaaattgtaggtgattaaggagatggttttcaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatacaattaaggatcattttaaaaaattgtaggtgattaaggagatggttttcaacta 320

                                                                       
Query: 121 aataaatattcaaaaacaatatctagaaaactacttttggtgttctgtatgaagtaattc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaatattctaaaacaatatctagaaaactacttttggtgttctgtatgaagtaattc 380

                                                                       
Query: 181 atctgactctttttcacatcagaatctctttgactcatattttatttcttccttgaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgactctttttcacatcagaatctctttgactcatattttatttcttccttgaatgg 440

                                                                       
Query: 241 taggattttcactctgactgattagaagcagagtcctgtgattcttgttttcttttgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggattttcactctgactgattagaagcagagtcctgtgattcttgttttcttttgcat 500

                                                                       
Query: 301 aatgatgatcataagggcagtacccatctctacatttcctttagatatttcttctacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgatgatcataagggcagtacccatctctacatttcctttagatatttcttctacaaa 560

                                                                       
Query: 361 tactgacaaggtaagtcagaaagataggttcatttttctccttttcttagttagccagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactgacaaggtaagtcagaaagataggttcatttttctccttttcttagttagccagtt 620

                                                                       
Query: 421 agtactctagccttggaattcctttctttaaacggtgctctcaactgcactctgataaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 agtactctagccttggaattcctttctttaaacggtgctctcaactgtactctgataaga 680

                                                                       
Query: 481 tccacctcaaaattaggatacagatttatgcttcatttcaaacattttcaatacttgctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccacctcaaaattaggatacagatttatgcttcatttcaaacattttcaatacttgctt 740

                                                                       
Query: 541 aatgttcttctactaaaaaaaat-aatataaattaactctcccctgaaaaatcttacatg 599
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgttcttctactaaaaaaaattaatataaattaactctcccctgaaaaatcttacatg 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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