BAC Information

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BAC

Clone NameMSMg01-487I14
Chromosome5 (Build37)
Map Location 136,713,012 - 136,713,347
singlet/doubletsinglet
Overlap geneSh2b2
Upstream geneBaz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718
Downstream geneCutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487I14.T7 (MSMg01no487_i14.b1)MSMg01-487I14.TJ (MSMg01no487_i14.g1)
ACCAG566477AG566478
length758723
length of high quality
(start - end)
322 (327 - 648)366 (325 - 690)
definitionCHROMAT_FILE: MSMg01no487_i14.b1 PHD_FILE: MSMg01no487_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:10 2005CHROMAT_FILE: MSMg01no487_i14.g1 PHD_FILE: MSMg01no487_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATATTTGCGGCCGCTAAACGAANCACANATTTCGTAGCTGGGCGGAA
NNNAANGTTTTTGCCATCACGAGAGGTTCNGGNGNCNGNGGNCATATCCC
AGCTCTCCTCCTGCATTCCCACCTGCTAGAAGAAGCCTAGTGACTCAGCC
CTGGGAGGAGTGTGCTCTGTCCTGGCCCAATACCCTATTCCCTGGAGCCT
TGGTTTTTCTATCAGTATAACAGACGGCTTAAGATATGTAAGGACATACT
TTGTACATTGACGACTGAGGACCAGCTGCCATGCTCCTAGGGTCTGGGAC
AGGTAAGGAATGACAACTGCTTCTTGAGGTCTTTGGGCTGAGATAAAGAC
AAAGCCTACTATTCCAGGGGTGAGAAATGGTAGGTCCCTAGGTACTAGAG
AGGTCCAGTATCCCCCACACTTCACTGCAATGGGGTCTGTCTGGTCTTAG
CGCCCCTAACTAGCTTCCTAGCCTGAAAAAAAAAAAAACACGCCGCTTTT
ATTGTTTTTGGACGACTCTTACGTAGTTGAGGCTGGCCTCGAGCACACTA
TATGGTTAACAAGGACCTTGATCTCTTATCTTCAAAGCTCCTACAGTACT
GGGATTTCAGGTGTGCAACAACACACCTGGAGGGAAACCAGATCTTCATG
CACGTCTTGTCGGCACCCCACCGGTTCAGCTATCCCCAGAGCCTGTTTTG
TGGCTTTGTTGTTCTTAAGTGGGATGGGGTTTTGGAGGGGTCGCCAAGAG
CATGGGAG
NAAGCGCCATTGAAGTGGGAGGCCTGGNGGCCGCCTTTTCAACAAGGTTA
GGTGACACTATAGATTGCTAAAAAGAATTCTCTGAACAGAAAATAGAGAA
ATGTAGTCCCCCACCATGGGCTTGCTCTGGGGTCTCAATTGTATTTTTCT
CCCTGTTGAATCTCAATTTTCTCATCTGTAAAGTGGGTAGGATGTGGGGA
TGACATAGTAGTGGAGAATGCTTTCTCATGTTCCAATTTTTTTATTGCCT
TATTTGTTTGTCACGCTCTAAGTTGTAAATTCTGACCTAGCGATTTTCTG
TAAGAGTTTGTCTGTGATTTTTTGTTTTCTGAAGACTGGCCAGGACCCAC
AAGGAGGCTTCTGAACTCTAAGTGGATTATCTGGTGTTCAGGGTACACTG
CATGTCCTAGTTTGCTTCTCTATCCCTGTAATAAAACAGGGAGCAAATCA
ATTTGGGGCAGGAAAGAATTTATGTGACTTGTATGTCCTGATCCTGGTAC
ATCACTGAGAACTAAGCCAGGGACCTGGAAAACAGGAACTAAAGGAGAGT
CCATGGAGGAAACTGCTTGCCAGCTTGCTCTCCATGGCTTGCTCAGCTGC
TTTCTTGTACAACCCAGACCACCTGCTCAGAGGTGGCCCCACTTACAGTG
GGCTAGGCCTCCCATGTCAATCACTCATCAAGAAACTACCCCATACAGTT
GCCCATAGGGGCAATTCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_i14.b1 MSMg01no487_i14.b1 CHROMAT_FILE:
MSMg01no487_i14.b1 PHD_FILE: MSMg01no487_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:10 2005
         (322 letters)



>mm_chr5_136712812_136713534
          Length = 723

 Score =  530 bits (274), Expect = e-155
 Identities = 315/336 (93%), Gaps = 14/336 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtctttgggctgagataaagacaaagcctactattccaggggtgagaaatggtaggtc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 201 aggtctttgggctgagataaagacaaagcctactagtccaggggtgagagatggtaggtc 260

                                                                       
Query: 61  cctaggtactagagaggtccagtatcccccacacttcactgcaatggggtctgtctggtc 120
           |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct: 261 cctaggtactagagagatccagcatcccccacacttcactacaatggggtctgtttggtc 320

                                                                       
Query: 121 ttagcgcccctaactagcttcctagcctgaaaaaaa--aaaaaac---------ac---g 166
           ||||||||||||||||||||||||||||||||||||  |||||||         ||   |
Sbjct: 321 ttagcgcccctaactagcttcctagcctgaaaaaaaacaaaaaacaacaaaaaaaccatg 380

                                                                       
Query: 167 ccgcttttattgtttttggacgactcttacgtagttgaggctggcctcgagcacactata 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgcttttattgtttttggacgactcttacgtagttgaggctggcctcgagcacactata 440

                                                                       
Query: 227 tggttaacaaggaccttgatctcttatcttcaaagctcctacagtactgggatttcaggt 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttaacaaggaccttgatctcttatcttcaaagctcctacagtactgggatttcaggt 500

                                               
Query: 287 gtgcaacaacacacctggagggaaaccagatcttca 322
           |||||||| |||||||||||||||||||||||||||
Sbjct: 501 gtgcaacatcacacctggagggaaaccagatcttca 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space:   223482
Effective search space used:   223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)