BAC Information

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BAC

Clone NameMSMg01-487M16
Chromosome5 (Build37)
Map Location 15,592,590 - 15,733,667
singlet/doubletdoublet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131, LOC626390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487M16.T7 (MSMg01no487_m16.b1)MSMg01-487M16.TJ (MSMg01no487_m16.g1)
ACCAG566669AG566670
length759751
length of high quality
(start - end)		690 (70 - 759)570 (75 - 644)
definitionCHROMAT_FILE: MSMg01no487_m16.b1 PHD_FILE: MSMg01no487_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:30 2005CHROMAT_FILE: MSMg01no487_m16.g1 PHD_FILE: MSMg01no487_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,592,590 - 15,593,279)(15,733,098 - 15,733,667)
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAGAATATCGAATCAGCTTTTGGATCTATGTACGTCCCCCCAA
AAAGCCAAAAGACCTATAATAAATGGGATTTACACTCTCTTAAATGAAAT
CTAAATGCAGTCTTTGTTAGAGGCATAAAAACTATCCAGATACCAAACAA
TAGGAAAGGATAAATTTTTAGTATGCATGGGTTAGGTTTGGCCTCGGGGA
TCTTACATCAAATATGACTGCGTTTGCATCCCATTAGCAAAATTGTAAAG
TAGTGTTTAGAACTTATACATCGAGATTTAGCATTTCAATTTGAAAACTA
GTGCTTTGTCTGTAGTGAGCAGATGCTCAACTGAGGATGGAGAGACCTAA
TGCAATTAAAAGATGTTTCTAGGTGGGAGGAGATCATTCAGCCATGTATC
GCCTGTCAGATCCACCTTGGCCAGCTTTCTATATGACAGATGCAGTTAGA
TTTTCCTAAGACTATTCAGCCAGCCATTAATTTGGCAACAGTCCCTCCAA
CAATAACTTATAAGACCTGGGCTTGGGAGGGGATTTATAAGCCCCCTTTT
AATATAGCAGAGATCTGATGTGTCACGGCCATGATACGAGCATGCCTGAT
AGGAGAATAACATCAGTGGCTTTTCAGGAGGGTAGCACAGATTGGCCTGG
AAAACAATGGTAGGAATTGGTACCTAGGGGACTCTGGTACAAATTAAACC
CATATTTTA

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCATTTCTGTTTTCTTTTGTTTATT
TTTATTAACTTTCATTTTTGGCATGGCCATGGCTGCTCATAGACCTTGAA
TAGAGTTGAAAGGCTTGTACTTTAACTATTCTTACTATCCCTTCCATCAG
CTTTCAAATGCTGGGAATACAGATGTGAAACATCACGTCTACCTCTGAAT
TTTTCACACTTTAAACATTTATTGAGAAATTTGGAAGGCAAAGTAATTTG
AATTGGATTAATAAGGAATTTTATGAATAATAGGATACAAATATAATAAA
GATGAGTAGATGAATATTGATGCTTCAAGATAGAAACATCAGAACATGTT
TTATGTTTGTTTGTATGTCGATATATTTATGTGCATGCTTTAAATATTAA
ATAATCAAAATCAGATCATATTTTAGACTCTCAATAGAGTTTATTATATT
TTAATTTTTATATTGATTTGCCCATTCTTGTGATAGTTAAACATAATTGC
AGCCAATTAGTACTTAATCTACCATCTATCTATTTATCTACCTACCTATC
GACCATTTATCATCTATCTACCTAAGTATCTTCTATTTATAGTATGTCTT
AGAATATATGAAAGTGGGGCTAACTTTACAAAAGTTGTGGTAGAAGTGGA
TTCTCTATATCAGTAAATATTAAAACTGACCTGAGCAAAATTAAAGCATA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_m16.b1 MSMg01no487_m16.b1 CHROMAT_FILE:
MSMg01no487_m16.b1 PHD_FILE: MSMg01no487_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:30 2005
         (690 letters)



>mm_chr5_15592390_15593479
          Length = 1090

 Score = 1295 bits (670), Expect = 0.0
 Identities = 685/690 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcttttggatctatgtacgtccccccaaaaagccaaaagacctataataaatgggat 60
           ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||
Sbjct: 201 tcagcttttggatctatgtacatcccccaaaaaagccaaaagacctatagtaaatgggat 260

                                                                       
Query: 61  ttacactctcttaaatgaaatctaaatgcagtctttgttagaggcataaaaactatccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacactctcttaaatgaaatctaaatgcagtctttgttagaggcataaaaactatccag 320

                                                                       
Query: 121 ataccaaacaataggaaaggataaatttttagtatgcatgggttaggtttggcctcgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataccaaacaataggaaaggataaatttttagtatgcatgggttaggtttggcctcgggg 380

                                                                       
Query: 181 atcttacatcaaatatgactgcgtttgcatcccattagcaaaattgtaaagtagtgttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttacatcaaatatgactgcgtttgcatcccattagcaaaattgtaaagtagtgttta 440

                                                                       
Query: 241 gaacttatacatcgagatttagcatttcaatttgaaaactagtgctttgtctgtagtgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacttatacatcgagatttagcatttcaatttgaaaactagtgctttgtctgtagtgag 500

                                                                       
Query: 301 cagatgctcaactgaggatggagagacctaatgcaattaaaagatgtttctaggtgggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagatgctcaactgaggatggagagacctaatgcaattaaaagatgtttctaggtgggag 560

                                                                       
Query: 361 gagatcattcagccatgtatcgcctgtcagatccaccttggccagctttctatatgacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 gagatcattcagccatgtatcgcctgtcagatccaccttggccagctttctgtatgacag 620

                                                                       
Query: 421 atgcagttagattttcctaagactattcagccagccattaatttggcaacagtccctcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcagttagattttcctaagactattcagccagccattaatttggcaacagtccctcca 680

                                                                       
Query: 481 acaataacttataagacctgggcttgggaggggatttataagcccccttttaatatagca 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 acaataacttataagacctgggcttgggaggggatttataagccccctttgaatatagca 740

                                                                       
Query: 541 gagatctgatgtgtcacggccatgatacgagcatgcctgataggagaataacatcagtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagatctgatgtgtcacggccatgatacgagcatgcctgataggagaataacatcagtgg 800

                                                                       
Query: 601 cttttcaggagggtagcacagattggcctggaaaacaatggtaggaattggtacctaggg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttttcaggagggtagcacagattggcctggaaaacaatggtaggaattggtacctaggg 860

                                         
Query: 661 gactctggtacaaattaaacccatatttta 690
           ||||||||||||||||||||||||||||||
Sbjct: 861 gactctggtacaaattaaacccatatttta 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_m16.g1 MSMg01no487_m16.g1 CHROMAT_FILE:
MSMg01no487_m16.g1 PHD_FILE: MSMg01no487_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:30 2005
         (570 letters)



>mm_chr5_15733053_15734022
          Length = 970

 Score = 1087 bits (562), Expect = 0.0
 Identities = 568/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcatttctgttttcttttgtttatttttattaactttcatttttggcatggccatggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgcatttctgttttcttttgtttatttttattaactttcatttttggcatggccatggct 556

                                                                       
Query: 61  gctcatagaccttgaatagagttgaaaggcttgtactttaactattcttactatcccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gctcatagaccttgaatagagttgaaaggcttgtactttaactattcttactatcccttc 496

                                                                       
Query: 121 catcagctttcaaatgctgggaatacagatgtgaaacatcacgtctacctctgaattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 catcagctttcaaatgctgggaatacagatgtgaaacatcacgtctacctctgaattttt 436

                                                                       
Query: 181 cacactttaaacatttattgagaaatttggaaggcaaagtaatttgaattggattaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cacactttaaacatttattgagaaatttggaaggcaaagtaatttgaattggattaataa 376

                                                                       
Query: 241 ggaattttatgaataataggatacaaatataataaagatgagtagatgaatattgatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggaattttatgaataataggatacaaatataataaagatgagtagatgaatattgatgct 316

                                                                       
Query: 301 tcaagatagaaacatcagaacatgttttatgtttgtttgtatgtcgatatatttatgtgc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 315 tcaagatagaaacatcagaacatgttttatgtttgtttgtatgtcgatatatttatgtac 256

                                                                       
Query: 361 atgctttaaatattaaataatcaaaatcagatcatattttagactctcaatagagtttat 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 255 atgctttaaatattaaataatcaaaatcagatcatatttgagactctcaatagagtttat 196

                                                                       
Query: 421 tatattttaatttttatattgatttgcccattcttgtgatagttaaacataattgcagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tatattttaatttttatattgatttgcccattcttgtgatagttaaacataattgcagcc 136

                                                                       
Query: 481 aattagtacttaatctaccatctatctatttatctacctacctatcgaccatttatcatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aattagtacttaatctaccatctatctatttatctacctacctatcgaccatttatcatc 76

                                         
Query: 541 tatctacctaagtatcttctatttatagta 570
           ||||||||||||||||||||||||||||||
Sbjct: 75  tatctacctaagtatcttctatttatagta 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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