Query= MSMg01no488_c18.b1 MSMg01no488_c18.b1 CHROMAT_FILE:
MSMg01no488_c18.b1 PHD_FILE: MSMg01no488_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:00 2005
(670 letters)
>mm_chr5_44232170_44233239
Length = 1070
Score = 876 bits (453), Expect = 0.0
Identities = 510/543 (93%), Gaps = 24/543 (4%)
Strand = Plus / Minus
Query: 5 gaattcttttcttcccgttaaaaggtgaatttaaaaaataataaaactatctta---tg- 60
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 543 gaattcttttcaaccagttaaaaggtgaatttaaaaaataataaaactatcttatcttgg 484
Query: 61 ------------------c--tctggactagttagtagccacgtatcttaccaacttcct 100
| |||||||| |||||| |||||||||||||||||||||||
Sbjct: 483 ttcagaatcaagacccatcgatctggacttgttagtggccacgtatcttaccaacttcct 424
Query: 101 taggaagctgaagccccttctttattagccaatggcgccctctactggacattcactata 160
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 423 taggaagctgaagccccttctttactagccaatggcgccctctactggacattcactata 364
Query: 161 gttgcagttctgattctgtttatttctatattgcatttctatattcagtttatgcactat 220
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 363 gttgcagttctgattctgtttatgtctatattgcatttctatattcagtttatgcactat 304
Query: 221 atttctgggtctatgctagacgtgttggtttgacacatttcagagtcaaagatggttgtg 280
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtttctgggtctatgctagacgtgttggtttgacacatttcagagtcaaagatggttgtg 244
Query: 281 agccaccgtgtgaatgtagggtatcatccctagatcctctgggacagcatatctctagcc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agccaccgtgtgaatgtagggtatcatccctagatcctctgggacagcatatctctagcc 184
Query: 341 ctagaatcacttccttaaaaaaatataggaacatctccaagacatactgttaagagaaaa 400
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ctagaatcaattccttaaaaaaatataggaacatctccaagacatactgttaagagaaaa 124
Query: 401 agaaaacaaaccccagaatcttatctatattatcatttattataacttatatgagagatc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 agaaaacaaaccccagaatcttatctatattatcatttattataacttatatgagagatc 64
Query: 461 tatgtgtgttatgtgggtacatgaccatgtgtgtgtatgaatgcacacatgtgctgtgac 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tatgtgtgttatgtgggtacatgaccatgtgtgtgtatgaatgcacacatgtgctgtgac 4
Query: 521 agg 523
|||
Sbjct: 3 agg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_c18.g1 MSMg01no488_c18.g1 CHROMAT_FILE:
MSMg01no488_c18.g1 PHD_FILE: MSMg01no488_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:00 2005
(625 letters)
>mm_chr5_44114277_44115301
Length = 1025
Score = 1131 bits (585), Expect = 0.0
Identities = 615/625 (98%)
Strand = Plus / Plus
Query: 1 tctcacccttggactgtttgacttccatgtgggaaagtgaggagtagcggctgccattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcacccttggactgtttgacttccatgtgggaaagtgaggagtagcggctgccattcc 260
Query: 61 tccagtcatgggctagcaggaagttcttgacagcaggtgctccttctggtcagagcagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagtcatgggctagcaggaagttcttgacagcaggtgctccttctggtcagagcagct 320
Query: 121 ttagaaagttcctaactctggtgttggctggagaccttgtagtcttccacagagctacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagaaagttcctaactctggtgttggctggagaccttgtagtcttccacagagctacct 380
Query: 181 caggccctggcaggtaagttccttgcaagacttaccacagagtatggggaatacagtatt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 caggccctggcaggtaagttccttgcaagacttaccacggagtatggggaatacagtatt 440
Query: 241 tacctttacaagccagtataggatttgaatgtgcagatcccaaagttcagagccagtccc 300
|||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 441 taccagtacaagccagtataggatttggatgtacagatcccaaagttcagagccagtccc 500
Query: 301 attggtgtatacttaaaatatgtgttttatgccgtggtgtgagagctccttgggatgaaa 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attggtatatacttaaaatatgtgttttatgccgtggtgtgagagctccttgggatgaaa 560
Query: 361 ggactgtgtgtgttctgaatcagcatttttaaagcattgatgttgagcgttcatagcatc 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagtgtgtgtgttctgaatcagcatttttaaagcattgatgttgagcgttcatagcatc 620
Query: 421 tgttctgcctgtctccacggtctctcttcatgtgttgtcacagggcccccaatggggact 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttctgcctgtctccatggtctctcttcatgtgttgtcacagggcccccaatggggact 680
Query: 481 acagcacagccagcttacagtcagtgaaggatgatgtatacattaacatttttgatgaag 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 acagcacagccagcttacagtcagtgaaggatgacgtatacattaacatttttgatgaag 740
Query: 541 tgctgtatgatatcctagaggtgagtttccagctgtaagggagtcatttgaactctgccg 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 tgctgtatgatatcctagaggtgagtttccagctgtaagggggtcatttgaactctgccg 800
Query: 601 gcatattcagatcccctaccactgt 625
|||||||||||||||||||||||||
Sbjct: 801 gcatattcagatcccctaccactgt 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
