BAC Information

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BAC

Clone NameMSMg01-488I13
Chromosome5 (Build37)
Map Location 83,991,509 - 83,991,829
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488I13.T7 (MSMg01no488_i13.b1)MSMg01-488I13.TJ (MSMg01no488_i13.g1)
ACCAG567234AG567235
length672668
length of high quality
(start - end)
324 (300 - 623)240 (49 - 288)
definitionCHROMAT_FILE: MSMg01no488_i13.b1 PHD_FILE: MSMg01no488_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:29 2005CHROMAT_FILE: MSMg01no488_i13.g1 PHD_FILE: MSMg01no488_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGCACGATTCGAATCAGGGGGGNGGAANNCATCNATTTCAAGAACAGGG
AGAATCAATTGGGATAGATGAAATGTTACCCAGGTGAATTGCTGTTGGCT
GAGAGATTAATGGGAAGACTCCTGGAGAAGACCCAGAGGTTTATTATCAT
GTCTTAACTCTCTGTCATTGAGAATCCTGTTGGAACTATAGAACTGCCAT
CATTGTTGCTAGTGTTGTGGCCCCTGATAAGTTACTATTGCTCAAGCATC
ACCTCTCATCTATGATATGTCAGCAATAAACCCCTGTTAAATCTTTTTTG
TCAAACAATGAAGACACACAATGAGGAGGAAGACCTGTTGACGAATATTT
TCAGCAATAAAAGAGAGGGGGATAAGAGGGGTGTGAAGGTGACATTAACT
AAATTAAACTATGTAATTATAAAAACACTTTCATAAGTACAATCAATAGG
TAATATAACTATTTGTATAAGATATGGAATGAATTTAGAATGAGTGTCAA
AAGCTTGGCTGATGTGCAAACTAAATATCATTAATATCTGATAAAAGAGA
GAGAGAGAGTGATAGATGCTGTGACTGTATTTCAAATATTTTTATAATTT
AATGTCAATCCCCTCTGTCCCAGACTTATGCCAGTTCCTGACTCCCTGGC
TTGTACTTTATCCAGTCTCCTA
GCCTGGTCGACAACAGGGGGTGAACTATAGAAGTACTAAAAGAAGTGGCC
TGTACTGGGGCATATAAAGTTTGCAATACCAAGGGACCTCTCTTCCCAGA
GATGGCCAACTAGGCCATCAAATGCTTTCTCTGCATCTAAGGAGATGATC
ATTTGATTTTTGTCTTTCAGTTTGTTTATATAGTGTATTACTTTGATGGA
TTTCCAAATATTAAATCATCCCTGCATCCCTGGGTTGAAGCCTACTTGGT
CATCATGGATGATCCTTTTGATGTGTTCTTGTATTTGGTTTTCTATGGAT
TTTATTGAGCATTTTTGCATCAATATTCATAAGGGAAATTGGTCTGAAGT
TCTCTTTCTTTGTTGGATCTTTCTGTGGTTTAGGTATCACAGTAATTGTG
GCTTCATAGACTGAATTGGGTAGAGTACCTTCTGTTTCTATTTTGTGGAA
TAGTTTGAGAAGAGTTGGAATTAGGTCTCCTTTTAAGGTCTGATAGAACT
CTGCAGTAAACCTATCTGGTCCTGGGCTTTTTTTTTTTTTTTTTTTTTTT
TTTTTGGGTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGATAT
AGGACTGGTTAGATCCTTAATGTGATCCTGAATTAATTTTGGGACCTGGT
ATCTATCTAGTTTTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_i13.b1 MSMg01no488_i13.b1 CHROMAT_FILE:
MSMg01no488_i13.b1 PHD_FILE: MSMg01no488_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:29 2005
         (324 letters)



>mm_chr5_83991307_83992029
          Length = 723

 Score =  584 bits (302), Expect = e-171
 Identities = 317/324 (97%), Gaps = 5/324 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   caaacaatgaagacacacaatgaggaggaagacctgttgacgaatattttcagcaataaa 62
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 203 caaacaatgaagacacacaatgaggaggaagacctgttgatgaatattttcagcaataaa 262

                                                                       
Query: 63  agagagggggataagaggggtgtgaaggtgacattaactaaattaaactatgtaattata 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 agagagggggataagaggggtgtgaaggtgacattaactaaattaaactatgtaatttta 322

                                                                       
Query: 123 aaaacactttcataagtacaatcaataggtaatataactatttgtataagatatggaatg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaacactttcataagtacaatcaataggtaatataactatttgtataagatatggaatg 382

                                                                       
Query: 183 aatttagaatgagtgtcaaaagcttggctgatgtgcaaactaaatatcattaatatctga 242
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 383 aatttagaatgagtgtcaaaagcttggctgatgtgcaaactaaatat---taatatctga 439

                                                                       
Query: 243 taaaagagagagagagag--tgatagatgctgtgactgtatttcaaatatttttataatt 300
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taaaagagagagagagagagtgatagatgctgtgactgtatttcaaatatttttataatt 499

                                   
Query: 301 taatgtcaatcccctctgtcccag 324
           ||||||||||||||||||||||||
Sbjct: 500 taatgtcaatcccctctgtcccag 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space:   224910
Effective search space used:   224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)