Query= MSMg01no488_m04.b1 MSMg01no488_m04.b1 CHROMAT_FILE:
MSMg01no488_m04.b1 PHD_FILE: MSMg01no488_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:46 2005
(682 letters)
>mm_chr5_60221588_60222664
Length = 1077
Score = 1156 bits (598), Expect = 0.0
Identities = 647/666 (97%), Gaps = 5/666 (0%)
Strand = Plus / Plus
Query: 17 gcagtagctatgtgctaagcattgttaaacacattaagtgaggttagatatttcaatgtt 76
|||||||||||||| |||||| || || |||||||||||||||||||||||||||||||
Sbjct: 217 gcagtagctatgtggtaagcactggcaagcacattaagtgaggttagatatttcaatgtt 276
Query: 77 cacacaaacaaagaatattttattagaataaaaaaatgtcattcatctatataagcttta 136
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 277 cacacaaacaaagaatattttattagaataaaaaaatgccattcatctatataagcttta 336
Query: 137 cttttcatctaaaataaaacttaagttgaccttctgtgttttgatgtaacaaatatggct 196
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 337 cttttcatctgaaataaaacttaagttgaccttctgtgttttgatgtgacaaatatggct 396
Query: 197 acattatatgagccataagacttgaacatgctcgttacacatgaatcttttttctttatc 256
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 397 acattatatgagccataagacttgaacatgctctttacacatgaatctattttctttatc 456
Query: 257 atgagttcatatttaaatttattgaatacatttccaacttggtttgctaaagagcaacct 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atgagttcatatttaaatttattgaatacatttccaacttggtttgctaaagagcaacct 516
Query: 317 tgtcctagaagacaggtctgaaacagcacctggcccttgtgcatgtgctcagcaaacatg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgtcctagaagacaggtctgaaacagcacctggcccttgtgcatgtgctcagcaaacatg 576
Query: 377 gttgccatccaggcccaattcagtctaatacaacctctcctccaactgtgaactgctgga 436
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 577 gttgccatccaggcccaattcagtctaatacaacctctcctccagctgtgaactgctgga 636
Query: 437 ataaggagaagagctgctcctgaagaacaagatgccattaccattgagtcctagactcac 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ataaggagaagagctgctcctgaagaacaagatgccattaccattgagtcctagactcac 696
Query: 497 tggccatccccagaaatgaaactgctgtgagtcaagcctgacctgcttcctctggtgtaa 556
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 697 tggccatccccagaagtgaaactgctgtgagtcaagcctgacctgcttcctct-----aa 751
Query: 557 gacagcataggtccttgtttctgctggaagtacaaatattgagcctggaaagtctcaggg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gacagcataggtccttgtttctgctggaagtacaaatattgagcctggaaagtctcaggg 811
Query: 617 catcccttatgtagacagaatttctgctgcaatgtatggaagaattacctgtcaataaaa 676
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 812 catcccttatgtagacagaatctcttctgcaatgtatggaagaattacctgtcaataaaa 871
Query: 677 cactga 682
||||||
Sbjct: 872 cactga 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1077
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1067
Effective search space: 717024
Effective search space used: 717024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_m04.g1 MSMg01no488_m04.g1 CHROMAT_FILE:
MSMg01no488_m04.g1 PHD_FILE: MSMg01no488_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:46 2005
(668 letters)
>mm_chr5_60360688_60361760
Length = 1073
Score = 1181 bits (611), Expect = 0.0
Identities = 656/673 (97%), Gaps = 5/673 (0%)
Strand = Plus / Minus
Query: 1 tcaacgaactgacaaattatttttaaaaatatactaagtaggatttgagttctttaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tcaacgaactgacaaattatttttaaaaatatactaagtaggatttgagttctttaatct 814
Query: 61 aag-aaagtatatttcaagtaaaacagtcattgtgaatttcagctagtttatacacactt 119
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aagaaaaatatatttcaagtaaaacagtcattgtgaatttcagctagtttatacacactt 754
Query: 120 caaatacttcagtgaggtcatgttatacatatagtcaaattttgactatatttttccact 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 caaattcttcagtgaggtcatgttatacatatagtcaaattttgactatatttttccact 694
Query: 180 taacttacactttatataattttcacatttttttttacctgtaacatttctccttgtttt 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 taacttacactttatattattttcacatttttttttacctgtaacatttctccttgtttt 634
Query: 240 ctgatgtttaaagcttaaataagattcccagaacctgcatcttgttctcaataaaacaaa 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 633 ctgatgtttaaagcttaaataagagtcccagaacctgcatcttgttctcaataaaacaaa 574
Query: 300 ttgttccagaaaactgaaagagtatttgttgtattattttgtt----agaagagacacat 355
|||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 573 ttgttccaaaaaactgaaatagtatatgttgtattattttgttagagagaagagacacat 514
Query: 356 atttagaatcaataaaagagagttgatattgaactgattttttttcatttttttctactt 415
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atttagaatcaataaaaaagagttgatattgaactgattttttttcatttttttctactt 454
Query: 416 tttaattgtatactattcttagaatttgtcacatatatgtaaaattaaactattatcagt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttaattgtatactattcttagaatttgtcacatatatgtaaaattaaactattatcagt 394
Query: 476 ctttagaattgaatgcatatggaacattaattataaaatgtaattattggccaaacccca 535
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctttagaattgaaggcatatggaacattaattataaaatgtaattattggccaaacccca 334
Query: 536 gaatgtgaaagtacatcactttttgttgatatctactatttctaatggcactacttgcct 595
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 333 gaatgtgaaagtacatcactttttgttgatatctattatttctaatggcattacttgcct 274
Query: 596 tacactgtggaaaatttcagaaagtcaaagttgaaagggggaagaagaggtgctcaccta 655
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tacactgtggaaaattccagaaagtcaaagttgaaagggggaagaagaggtgctcaccta 214
Query: 656 ctagcagactaga 668
|||||||||||||
Sbjct: 213 ctagcagactaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1073
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1063
Effective search space: 699454
Effective search space used: 699454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
