BAC Information

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BAC

Clone NameMSMg01-488N19
Chromosome5 (Build37)
Map Location 139,257,709 - 139,258,374
singlet/doubletsinglet
Overlap geneBC004044
Upstream geneZcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
Downstream geneEG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488N19.T7 (MSMg01no488_n19.b1)MSMg01-488N19.TJ (MSMg01no488_n19.g1)
ACCAG567484AG567485
length734760
length of high quality
(start - end)		668 (36 - 703)668 (76 - 743)
definitionCHROMAT_FILE: MSMg01no488_n19.b1 PHD_FILE: MSMg01no488_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:54 2005CHROMAT_FILE: MSMg01no488_n19.g1 PHD_FILE: MSMg01no488_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCCAG
TTCGGGGCTGGGGGCATGGCTCAATGGTAGAGCCCCTGCCTAGAATCCCT
CAGTGAGGGGCTGGGAGTGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATC
CCCCAGTGAGGGGCTGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAA
TCCCCCAGTGAGGGGCTGGGAGTGTGGCTCAGTGGTAGAGCCCCTGCCTA
GAATCCCCCAGGGAGAGGCTGGGGGTGTGGCTCAGTGGTAGAGCCCCTGC
CTAGAATCCTGCAGTGGGGGACTGGGAGTGTGGTTCAGTGGTAGACTGAG
CCTAGCATTATGAAGCCCTGGGTGCAGTTCCCAGCACCACAATAAAACAG
TTGAAGTAAAGAAGCTGGGCAGGTACATTGCGGTGCCTCTGGAGAACAGA
TTCTACATAGATATCCAGGATTCTCCCCGTTCTTGGAGTCATTGAGACCC
TGCCTTGTGGCAGTCTTGAACACTATAAGCTCAGGTTCCCCTTCTGACTT
AGACACCCCTAAGCTGTTCAGGAGACTGGCCTCAAGACAGTCATGACTCA
GTGGGGCATGGAGTCTGGCCTGAGTACAGACCTCTTACCTGTGGCTGAGG
GAGGGCAATGGACCCTCTCTGAGGGGCTGCAGTTCTTACAGAGCTATGGT
GTGATCCCACCCCAGAGAGAAGCAGAGACCCCCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTTAGCTTTTTCAGAAAATGCAA
ACATGTTTTTCAAGGCAGTGATTTCAATGCATACCCATCAACAGGGTAGG
ATGGTCTCAATTTGACCAGCCCTGTTATGCCCATTTGTTTGTGTTGTGGG
AGAGCAGGGCATGCTCATAGGAGACAACTTGTAGAAGTCCATTCTTTCCA
TCACGTTGTTCCCAGGGATCGAACTCATTGTCAGCCTTGGCAGCAAGTGC
CTTCACCCACTACGCTGTCTCTCCTGACCCAGTTGTCTCTTGTCCCTAGA
GAATGTGAGGTAGTGTCTCTTGCTGGCTTTGATTTGTGTTTTCTAGTAAC
CAGCATCCTGGAAAGTCCTCATGAACTTGTCGGTCATTTCTACATCTTCT
TTGGAGACATTTGTAGTCAAGTCTTTTGCCTGCTTTTATTGATTTTTGCC
TGTGTGTGTGGGGGGCACAAGTGCATATGCCCATATGTGTATAAATGCAT
GTGGAGGCCAGAGTGTTCTTCTTCATCTTGAGTGCCCTTCCTCGGGAGTC
TTGCTTTTTGAGGCAGAATCTCTCATAAGACTGGAACTCATGGACTGGGC
TAGCCTGGCTGACCAGTGAGTCTAGGGATCCACTTGGCTCTTCCTCTCCA
GTGTTGCGAATACAAGTGTGCACTACTGCACACTTTGTTGNTGTTGTTGT
TTTGTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_n19.b1 MSMg01no488_n19.b1 CHROMAT_FILE:
MSMg01no488_n19.b1 PHD_FILE: MSMg01no488_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:54 2005
         (668 letters)



>mm_chr5_139257506_139258574
          Length = 1069

 Score = 1056 bits (546), Expect = 0.0
 Identities = 639/672 (95%), Gaps = 14/672 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccagttcg-ggg-ctg-ggggcatggctcaatggtagagcccctgcctagaat 61
           |||| |||||||  | ||| ||| ||||| ||||||| ||||||||| ||||||||||||
Sbjct: 204 gaatcccccagt--gagggactgaggggcgtggctcagtggtagagcacctgcctagaat 261

                                                                       
Query: 62  ccctcagtgaggggctgggagtgtggctcagtggtagagcccctgcctagaatcccccag 121
           ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 262 cccccagtgaggggctggg-gtgtggctcagtgatagagcccctgcctagaatcccccag 320

                                                                       
Query: 122 tgaggggct-ggggcgtggctcagtggtagagcccctgcctagaatcccccagtgagggg 180
           ||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 321 tgaggggctgggggcgtggctcagtgatagagcccccgcctagaatcccccagtgagggg 380

                                                                       
Query: 181 ctgggag-tgtggctcagtggtagagcccctgcctagaatcccccagggagaggctgggg 239
           ||||| | | ||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 381 ctgggggct-tggttcagtggtagagcccctgcctagaatcccccagtgaggggctgggg 439

                                                                       
Query: 240 gtgtggctcagtggtagagcccctgcctagaatcctgcagtgggggactgggagtgtggt 299
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcgtggctcagtggtagagctcctgcctagaatcctgcagtgggggactgggagtgtggt 499

                                                                       
Query: 300 tcagtggtagactgagcctagcattatgaagccctgggtgcagttcccagcaccacaata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 500 tcagtggtagactgagcctagcattatgaagccctgggtgcagttcccagcacaacaata 559

                                                                       
Query: 360 aaacagttgaagtaaagaagctgggcaggtacattgcggtgcctctggagaacagattct 419
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaacagtcgaaataaagaagctgggcaggtacattgcggtgcctctggagaacagattct 619

                                                                       
Query: 420 acatagatatccaggattctccccgttcttggagtcattgagaccctgccttgtggcagt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 620 acatagatatccaggattctccccgttcttggagtcattgagaccctgccttatggcagt 679

                                                                       
Query: 480 cttgaacactataagctcaggt-tccc--cttctgacttagacacccctaagctgttcag 536
           |||||||||||||||||||||| ||||  |||  ||||||||||||||||||||||| ||
Sbjct: 680 cttgaacactataagctcaggtctccctcctt--gacttagacacccctaagctgtttag 737

                                                                       
Query: 537 gagactggcctcaagacagtcatgactcagtggggcatggagtctggcctgagtacagac 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gagactggcctcaagacagtcatgactcagtggggcatggagtctggcctgagtacagac 797

                                                                       
Query: 597 ctcttacctgtggctgagggagggcaatggaccctctctgaggggctgcagttcttacag 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctcttacctgtggctgagggagggcaatggaccctctctgaggggctgcagttcttacag 857

                       
Query: 657 agctatggtgtg 668
           ||||||||||||
Sbjct: 858 agctatggtgtg 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space:   696822
Effective search space used:   696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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