GATCTTXXXXXXXXXXXXXXXXXXXXXXXXXAAATCGAGAGGAGGGGCGG
AATTCTCAACTTACCAATCTTGAATGGCCAAAAAGCATCTAAAGAAATGT
TCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAATGACCTCACACCA
GTCAGAAAGGCTCAGATCAAAAACTCAAGTGACAGCAGATGCTGGTGAGG
ATGTCAAGAAAGAAGATAACTCCTCCATTGCTGGGGGGATTGCAAGCTTG
GACAACCACTGTGGAAATCAGTCTGGCAATTCCTCAGAACATTGGACATA
GTACTACCAGAGGACCCAGCTATACCACTCCTGGGCATATACCCATAAGA
TGCTCCAACATGTAATAATGACATATGCTCCATTATGTTCATAGCAGCCA
TATTTATAATAGCCATAAGCTGGAAAGAAACCAGATGTACATCAACAGAA
AAATGGATACAAAAAATGTGGTACATTTACACAGTCAATTACTACTCAGC
TGTTAAAAACAGTGACTTCATGAAATTTGGAGGCAAATCGATGGATCTAG
AAAATATCATCCTGAGTGAGGTAACTCAGTCACAAAAGAACTCACATGGT
ATGTACTCACTAATAAGTGGATATTAGGCAAAGAGTGTGGAATACCCACG
ATACAACTCACAGACCCCATGAAGCTCAAGAGGAAGGAAGACAAAAGTGT
GGATGCTTCAGTCCTACTTATAAGGGGGAACAAAATAATCAAGGGAAGTA
GAAGGTGGGAGGA

CGATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTGTGGCTGGCTCAATAGTGGAGACTAGG
ATTGACCCTGGTACCCAGGGACTGGTTGCACTTCTGCACACTTGGCATGA
GTATGAATTTCCAGATGGAAGTTACTAGGAATTTCAGTGTTCTAGTTTTT
AGTTTAAGTTTTTTTCACAAACACACATGCACACATGCACGCATGTGCAC
ACACACACACACACACACACACAGACACACAGACACAGACACACACAGAC
ACACAGACACAAACACTTCTTCAGACACACAGACACAGACACACACACAC
ACACAGACACACAGACACAGACACACACACACAGACACAGACAGACAGAC
ACACACACACACACACACAGACAGACACACACACACACAGACACACAGAC
ACACACAGACACACACAGACACACACAGACACAGACACACACAGACACAG
ACACAGACACACACACACACACACACACACACACACAGACACAGTGCTTT
TCTGAGCTTGAGGATACTTGTATTAGACTTTAAAGGAAAAATCCCAGGCC
ACACAAGCTATCAATTCTGTCCGCTGCCTGTAGGTTGAACATACAGAGAA
AGACAGGAAGCCCTGCCATTTAAGGTAAGCTGGCGCAGAGATCAGACATA
TGGTGGACACACAGCCTTATGTCGGGGAGGGAATTTACTAGAGAACCTTC
ATATATG

Query= MSMg01no488_o23.g1 MSMg01no488_o23.g1 CHROMAT_FILE:
MSMg01no488_o23.g1 PHD_FILE: MSMg01no488_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:59 2005
         (566 letters)



>mm_chr5_17845595_17846560
          Length = 966

 Score =  574 bits (297), Expect = e-168
 Identities = 333/349 (95%), Gaps = 12/349 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtggctggctcaatagtggagactaggattgaccctggtacccagggactggttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgtgtggctggctcaatagtggagactaggattgaccctggtacccagggactggttgca 286

                                                                       
Query: 61  cttctgcacacttggcatgagtatgaatttccagatggaagttactaggaatttcagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cttctgcacacttggcatgagtatgaatttccagatggaagttactaggaatttcagtgt 226

                                                                       
Query: 121 tctagtttttagtttaagtttttttcacaaacacacatgcacacatgcacgcatgtgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tctagtttttagtttaagtttttttcacaaacacacatgcacacatgcacgcatgtgcac 166

                                                                       
Query: 181 acacacacacacacacacacacagacacacagacacagacacacacagacacacagacac 240
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 165 acacacacacacacacacaca--gacacacagacacagacacacacagacacacagacac 108

                                                                       
Query: 241 aaacacttcttcagacacacagacacagacacacacacacacacagacacacagacacag 300
           ||||||  |  |||||||||||||||||||||||||||| |||||    ||||||||  |
Sbjct: 107 aaacaca-ca-cagacacacagacacagacacacacacagacaca----cacagaca--g 56

                                                            
Query: 301 acacacacacacagacacagacagacagacacacacacacacacacaca 349
           |||||||||||  |||||| |||||||||||||||||||||||||||||
Sbjct: 55  acacacacaca--gacacacacagacagacacacacacacacacacaca 9



 Score =  128 bits (66), Expect = 1e-33
 Identities = 94/106 (88%), Gaps = 8/106 (7%)
 Strand = Plus / Minus

                                                                       
Query: 374 cacagacacacacagacacacacagacacacacagacacagacacacacagacaca--ga 431
           |||| ||||||||| ||||||||||  |||||||||||||||||||||||||||||  ||
Sbjct: 168 cacacacacacacacacacacacag--acacacagacacagacacacacagacacacaga 111

                                                         
Query: 432 cacagacacacacacacacaca--caca--cacacacacagacaca 473
           |||| ||||||||| |||||||  ||||  ||||||||||||||||
Sbjct: 110 cacaaacacacacagacacacagacacagacacacacacagacaca 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 193
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 3
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)