BAC Information

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BAC

Clone NameMSMg01-489B07
Chromosome5 (Build37)
Map Location 71,702,186 - 71,702,330
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2, LOC635092
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d, Corin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489B07.T7 (MSMg01no489_b07.b1)MSMg01-489B07.TJ (MSMg01no489_b07.g1)
ACCAG567651AG567652
length685741
length of high quality
(start - end)
150 (56 - 205)521 (83 - 603)
definitionCHROMAT_FILE: MSMg01no489_b07.b1 PHD_FILE: MSMg01no489_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:11 2005CHROMAT_FILE: MSMg01no489_b07.g1 PHD_FILE: MSMg01no489_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTGGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGTTATTTTACCTTGGCTGTGGCTTTTGCATGTCA
TTAAAATGAAGACAACCTCATACAATCATTATTACCCAAGAAATGACATC
TCCCTAATAGAAGGGCAAGACATTTTATTTCCTGAATTTATGAATTGATT
GTAAAGNNCCCNNNNNNNNNNNNTCACTTGTGAGATATCCCACCTCAACT
TTTTAACTTAAAAAGGGGTTCTGGTTTGGAAAGGAAAAAATGGGAAAAAG
GGAGTAAGAAAACCCTTTTCCACCTGGAACCACCCCTTTTATCTTGGTTC
ATTAAAAAAAAGGGGTATTTAATTTTTGGAAAGTCCGGGTCTTTTTGGGA
AACCCCAAAAGGGCCCCCTTCTCTTGGGTTAAAGTGGGGGGGAACACAAA
AAAAATTCTGGGGGGGGGGGTTTCTTTCTTGGGGGGGGGGGGGGGGAAAA
AAAAAAAAAATATNATATTTATATGTTTTTTTTTNTTNTTTNNANAAATA
AAAAANAAATANNNNNNNCCCTTTTCNTCCCTTNNNNNNTGGGNCNAAAT
TAAAAAAAAAAAACAAANNNGTGGGGGTGGGGTGTTAAAAGGACTACTTT
TTTTTTTTTTTCAATAAAAAAGAAAAAAGCCAAAT
AAAANTTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCTTTTTTGAGTCT
TTGTGTGGTTTAAGTGTCAGGGTGACTATGGCTTCATAGAATAAGCTTGA
CAGTGTTCCTTCTGTTTCTGTTTTGTAAAATAGCTCTTCTTTTATGTCTG
GAAGAATTCTGTACTGAAACTATCTGTTCCTACACACTTTTTGATTGGAA
GGTTTTTGATAACTGCTTCTATTTCCTCGGGGGGTATAGGGCTACAACAT
AACTTCTTTACCTGGGGCTCAGGAAGCATTAAGGATGGTGGGGTGGAAAA
ATTGTAAGAGAGGATCAAGAAGTCTACAGTGAAATCATGTCTCCTACAAA
TGACTGGAAAGCCACACTCATGATTTCTAGCAAATATATCTACCTAAAGA
AGACCTACAGAATGATAATATCAATAGACATGCTAACATTGAAAGGGGAA
AGCCCACAGGGACTTACCCCAGACAAAGACCCACAAGTAACTAAGAACTA
CTTAGGGAGGTACAATTAGCCTCTCTCAGGGATAACTGCTAATTGTTTAC
CCAATGCAAAGTCATCAGTCCTGATATCATATGTACAAAGCCACACTAAA
CAGACTTAGCAGGTTGTATTTATGTATTATGCATGTATCTTTATCTCTAT
TATCTATATCCCTATCTGTGTCTCTATATACACATCTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_b07.b1 MSMg01no489_b07.b1 CHROMAT_FILE:
MSMg01no489_b07.b1 PHD_FILE: MSMg01no489_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:11 2005
         (150 letters)



>mm_chr5_71701982_71702531
          Length = 550

 Score =  242 bits (125), Expect = 8e-69
 Identities = 140/145 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttattttaccttggctgtggcttttgcatgtcattaaaatgaagacaacctc 64
           ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 349 gaattcagttggtttaccttggctgtggcttttgcatgacattaaaatgaagacaacctt 290

                                                                       
Query: 65  atacaatcattattacccaagaaatgacatctccctaatagaagggcaagacattttatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atacaatcattattacccaagaaatgacatctccctaatagaagggcaagacattttatt 230

                                    
Query: 125 tcctgaatttatgaattgattgtaa 149
           ||||||||||| |||||||||||||
Sbjct: 229 tcctgaatttacgaattgattgtaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)