Query= MSMg01no489_b20.b1 MSMg01no489_b20.b1 CHROMAT_FILE:
MSMg01no489_b20.b1 PHD_FILE: MSMg01no489_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:14 2005
(618 letters)
>mm_chr5_122563412_122564429
Length = 1018
Score = 1154 bits (597), Expect = 0.0
Identities = 606/609 (99%)
Strand = Plus / Minus
Query: 1 tcacctcttagcaaggttgtcccctcactggagtggccacctgtgctgaaatcttccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcacctcttagcaaggttgtcccctcactggagtggccacctgtgctgaaatcttccatt 550
Query: 61 atttccacctgaaatggcacccgagggtgggaggggctatgtgaaggagcttggacaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atttccacctgaaatggcacccgagggtgggaggggctatgtgaaggagcttggacaagc 490
Query: 121 tgtactgggaactggcctcgctccagtcctggaacttggagtgagcctggtcatctgaag 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgtactgggaactagcctcgctccagtcctggaacttggagtgagcctggtcatctgaag 430
Query: 181 gggtgactcagattcttgggagagtttgagggaccctagactgagctgccaggtctagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gggtgactcagattcttgggagagtttgagggaccctagactgagctgccaggtctagtg 370
Query: 241 cagtagccactagttgtccaaatatattctttaccctgtaatacaagagaaacttcagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cagtagccactagttgtccaaatatattctttaccctgtaatacaagagaaacttcagct 310
Query: 301 gccctgtctctggtgccatgttgcaagttctcagtacctaggcgtggccatgacatggcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gccctgtctctggtgccatgttgcaagttctcagtacctaggcgtggccatgacatggcg 250
Query: 361 tggttagtgcacacaggatgtgagagatgatgctgacttctctttctaggtggttctgag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cggttagtgcacacaggatgtgagagatgatgctgacttctctttctaggtggttctgag 190
Query: 421 cccgtgtggatcatgaccccgttgggggttgaatgtttctttcacaggggtcgcctgaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cccgtgtggatcatgaccccgttgggggttgaatgtttctttcacaggggtcgcctgaga 130
Query: 481 ccattggaacacacagatgtttacattacaattcaaaacagtagcaaagttacagttatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ccattggaacacacagatgtttacattacaattcaaaacagtagcaaagttacagttatg 70
Query: 541 aagtagcgacagaaataattttatgtttggggagtcaccacgacatgaaggaactatatt 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 69 aagtagcgacagaaataattttatgtttggggagtcaccacaacatgaaggaactatatt 10
Query: 601 aaagggtcg 609
|||||||||
Sbjct: 9 aaagggtcg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_b20.g1 MSMg01no489_b20.g1 CHROMAT_FILE:
MSMg01no489_b20.g1 PHD_FILE: MSMg01no489_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:14 2005
(549 letters)
>mm_chr5_122398229_122399176
Length = 948
Score = 1023 bits (529), Expect = 0.0
Identities = 544/549 (99%), Gaps = 1/549 (0%)
Strand = Plus / Plus
Query: 1 catcaatttatagatcagcgcagggctgcccgggcgatggggcggcgcgcggcggggctc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catcaatttatagatcagcgcagggctgcccgggcgatggggcggcgcacggcggggctc 260
Query: 61 gaccagcaccaggccggtgtgtgattaagataagccccggttcctttcatacattcctta 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccagcaccaggccggtgtgtgattaagataagccccggttcctttcatacattcctta 320
Query: 121 gtgggggctcattctccggcaggcggagacgttcaccgcagttaaagatcactgcagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggggctcattctccggcaggcggagacgttcaccgcagttaaagatcactgcagctt 380
Query: 181 ctcagacgccaaatttgaggggattgatcaataaatcaaatcaggccgatcgatcggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagacgccaaatttgaggggattgatcaataaatcaaatcaggccgatcgatcggcca 440
Query: 241 atcatgagagtctagccggtgcattatcgccggcgccttccaagccagagcttttcatgg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaggagagtctagccggtgcattatcgccggcgccttccaagccagagcttttcatgg 500
Query: 301 cttccatcaaaacagcctggccctggccggcagccagcggctggcctgtctcatagccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttccatcaaaacagcctggccctggccggcagccagcggctggcctgtctcatagccca 560
Query: 361 ggccgccgagaggggctgcctgcccagcgggagagcagtaaatttctcatcaaacagcgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccgccgagaggggctgcctgcccagcgggagagcagtaaatttctcatcaaacagcgg 620
Query: 421 atggaggagcagggcgaacatctgttgtgctgcagtgagtgactctgacagaccgccgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggaggagcagggcgaacatctgttgtgctgcagtgagtgactctgacagaccgccgcc 680
Query: 481 cgacggcagcatccccggggcacgtggggaggggggggcccatggaatgttccacgggtt 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 681 cgacggcagcatccccggggcacgtggggaggggggg-cccatggaatgttccactggtt 739
Query: 541 acgtccagc 549
|||||||||
Sbjct: 740 acgtccagc 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space: 505582
Effective search space used: 505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
