Query= MSMg01no489_m22.b1 MSMg01no489_m22.b1 CHROMAT_FILE:
MSMg01no489_m22.b1 PHD_FILE: MSMg01no489_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:11 2005
(595 letters)
>mm_chr5_36837735_36838729
Length = 995
Score = 1135 bits (587), Expect = 0.0
Identities = 590/591 (99%)
Strand = Plus / Plus
Query: 5 gaattccaggtttgggatcaaataaggcattgcacagcaccctgagtccacaccgttaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggtttgggatcaaataaggcattgcacagcaccctgagtccacaccgttaca 264
Query: 65 cactgtagaggacacgggcctgcattcactcggaatgccaatttacattttacacaaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactgtagaggacacgggcctgcattcactcggaatgccaatttacattttacacaaaac 324
Query: 125 aacacttcagcatccacgtgttatcaaacaccacagcttctgaatcagatcctgaatcac 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcacttcagcatccacgtgttatcaaacaccacagcttctgaatcagatcctgaatcac 384
Query: 185 tcctactatgtgcctgctgagacaggtgctgcatactgggtctagtaagacccacatagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctactatgtgcctgctgagacaggtgctgcatactgggtctagtaagacccacatagt 444
Query: 245 aagacatgtgtctgagacacactcagtagagcttggagtgagctaggaaatcagaacaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagacatgtgtctgagacacactcagtagagcttggagtgagctaggaaatcagaacaaa 504
Query: 305 gaggagagtaccattttcctagtagggatcagcaaagcaacaaggtatcaatttttctgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggagagtaccattttcctagtagggatcagcaaagcaacaaggtatcaatttttctgt 564
Query: 365 tgtcattgttgggtttttgagaaagaatcaagttacacagcagactaggctggactagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtcattgttgggtttttgagaaagaatcaagttacacagcagactaggctggactagaa 624
Query: 425 ctcactattctcctgttactaacaacctctgagtgatggggttacaggtgtatgccacta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcactattctcctgttactaacaacctctgagtgatggggttacaggtgtatgccacta 684
Query: 485 tgcctggctttctcaaatgtcaccgtaaattactaaaaaccgatcttacactttaataat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcctggctttctcaaatgtcaccgtaaattactaaaaaccgatcttacactttaataat 744
Query: 545 gcaaaccatcagatgaaagatattctcttaaaaatatgacaattgggagct 595
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcaaaccatcagatgaaagatattctcttaaaaatatgacaattgggagct 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_m22.g1 MSMg01no489_m22.g1 CHROMAT_FILE:
MSMg01no489_m22.g1 PHD_FILE: MSMg01no489_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:11 2005
(510 letters)
>mm_chr5_37088115_37089024
Length = 910
Score = 959 bits (496), Expect = 0.0
Identities = 504/510 (98%), Gaps = 6/510 (1%)
Strand = Plus / Minus
Query: 1 acacggtagaaggagagaaacggactcttgtgggttgtcctctgaccccacactccaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 761 acacggtagaaggagagaaacggactcttgtgggttgtcctctgaccccac------act 708
Query: 61 gcgatccattagtacacatcaataaataagtctaaaaaacataagatggagtgtgattga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gcgatccattagtacacatcaataaataagtctaaaaaacataagatggagtgtgattga 648
Query: 121 taactgatgttaccctttgacctccacaggtgcctgcccacaatcacccgaggaacacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 taactgatgttaccctttgacctccacaggtgcctgcccacaatcacccgaggaacacat 588
Query: 181 acacacagattatagtcaacaggatggctacaaagtggctgtgttatctttcctttcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acacacagattatagtcaacaggatggctacaaagtggctgtgttatctttcctttcata 528
Query: 241 tgtttgcgatactttgttactcttttaaaactgccctactatcgatatgcctttacagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tgtttgcgatactttgttactcttttaaaactgccctactatcgatatgcctttacagaa 468
Query: 301 ggtacagactaggagacactaatgttattatggatgtatgtaccaaaaaatgtgtgcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggtacagactaggagacactaatgttattatggatgtatgtaccaaaaaatgtgtgcaaa 408
Query: 361 ttctccatatttagggaaatgtttccctggtctgtgcaagcctggcttctgaggtcctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttctccatatttagggaaatgtttccctggtctgtgcaagcctggcttctgaggtcctga 348
Query: 421 agatcctgacaccatttatgcccaccttcactctcagatgaccctggattttccactctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agatcctgacaccatttatgcccaccttcactctcagatgaccctggattttccactctc 288
Query: 481 tcgcatgttatatgagtttgcctggctgcc 510
||||||||||||||||||||||||||||||
Sbjct: 287 tcgcatgttatatgagtttgcctggctgcc 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
