Query= MSMg01no489_o02.b1 MSMg01no489_o02.b1 CHROMAT_FILE:
MSMg01no489_o02.b1 PHD_FILE: MSMg01no489_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:17 2005
(671 letters)
>mm_chr5_64531040_64532110
Length = 1071
Score = 1255 bits (649), Expect = 0.0
Identities = 663/669 (99%), Gaps = 4/669 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttta--tccctttatgtttgcaaggcagatactctaccaattgggttatcac 62
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttcaggt--ctttatgtttgcaaggcagatactctaccaattgggttatcac 262
Query: 63 ccccatctctctttaaatcttagtatctattcttgcataatcaatgcaaagttattatct 122
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccccagctctctttaaatcttagtatctattcttgcataatcaatgcaaagttattatct 322
Query: 123 ctatcctccacctaaacaaggcttgtattgttttaatgtttatcttatgcaatatattca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctatcctccacctaaacaaggcttgtattgttttaatgtttatcttatgcaatatattca 382
Query: 183 aaagactcacagctcaaaggatacagaaggcatacagcgaaatagctttatccttgtaca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagactcacagctcaaaggatacagaaggcatacagcgaaatagctttatccttgtaca 442
Query: 243 tagtccatgcattaatagagctatgttcatcagcttcaagggcacacagcaatcattgga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tagtccatgcattaatagagctatgttcatcagcttcaagggcacacagcaatcattgga 502
Query: 303 tgaattcctttgtcttgatttgttttgtacaaatggtagaagtctttacccattgttctc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgaattcctttgtcttgatttgttttgtacaaatggtagaagtctttacccattgttctc 562
Query: 363 cactgtgctgttttactatgcaattgtgaaatcatgtttcatgtcccgacttattccctg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cactgtgctgttttactatgcaattgtgaaatcatgtttcatgtcccgacttattccctg 622
Query: 423 agaagaagtcattgagcaatccctgttcactgttacaaacacactaacattctgcagttg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaagaagtcattgagcaatccctgttcactgttacaaacacactaacattctgcagttg 682
Query: 483 ttaatggtgagaaatctgcctccaaccaaaaaaagttttctttgcatcatagctcaaatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttaatggtgagaaatctgcctccaaccaaaaaaagttttctttgcatcatagctcaaatc 742
Query: 543 aattcccttactgaggccgaggttacttctcatttgtgctctgtcaaatggcagcagtgc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aattcccttactgaggccgaggttacttctcatttgtgctctgtcaaatggcagcagtgc 802
Query: 603 agacagtaaccttgccctggatctttgcatgtctctgtgcgtccctgcacgataatctac 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agacagtaaccttgccctggatctttgcatgtctctgtgcgtccctgcacgataatctac 862
Query: 663 ttcattttt 671
|||||||||
Sbjct: 863 ttcattttt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_o02.g1 MSMg01no489_o02.g1 CHROMAT_FILE:
MSMg01no489_o02.g1 PHD_FILE: MSMg01no489_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:17 2005
(596 letters)
>mm_chr5_64680265_64681260
Length = 996
Score = 1015 bits (525), Expect = 0.0
Identities = 542/555 (97%), Gaps = 13/555 (2%)
Strand = Plus / Minus
Query: 48 caagtgcaggcaggagcagccagccaaggccagtcacagtggcttctaggatgatatgcc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 caagtgcaggcaggagcagccagccaaggccagtcacagtggcttctaggatgatatgcc 937
Query: 108 aaagacaacacatacaaaaacaaacacaaaacagaagaaaaaacaaaacaaaaccaaaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 aaagacaacacatacaaaaacaaacacaaaacagaagaaaaaacaaaacaaaaccaaaaa 877
Query: 168 accaaaaacttcacatgaacaatcaaatccttggtttgaaaactccatctcaagacagat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 accaaaaacttcacatgaacaatcaaatccttggtttgaaaactccatctcaagacagat 817
Query: 228 ctttattcaccacc------tttttttcaaagttaaataaaactgaaggaaaaccaatct 281
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 816 ctttattcaccaccgaaaag-------caaagttaaataaaactgaaggaaaaccaatct 764
Query: 282 tgccaggggaggtggcacatgcctggaactccagtatctgtgaggctagggcacaggctg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tgccaggggaggtggcacatgcctggaactccagtatctgtgaggctagggcacaggctg 704
Query: 342 ccaagtagcactacagagccagacccatctcaaagaggagaaattaaaaataatcacatc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ccaagtagcactacagagccagacccatctcaaagaggagaaattaaaaataatcacatc 644
Query: 402 tgtcaactggacactacctgcttctgccgttgccataaaaccctgaagaaagggagacta 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgtcaactggacactacctgcttctgccgttgccataaaaccctgaagaaagggagacta 584
Query: 462 gtcccataaagtcctacagaacccacaactccctattcaaataagttacaagtgggcaga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtcccataaagtcctacagaacccacaactccctattcaaataagttacaagtgggcaga 524
Query: 522 aggacaactatcttaactcaaacacaacagtactggggaagaaagcaagctctttcttgg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aggacaactatcttaactcaaacacaacagtactggggaagaaagcaagctctttcttgg 464
Query: 582 ggatgggagagcaga 596
|||||||||||||||
Sbjct: 463 ggatgggagagcaga 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
