Query= MSMg01no490_a12.b1 MSMg01no490_a12.b1 CHROMAT_FILE:
MSMg01no490_a12.b1 PHD_FILE: MSMg01no490_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:29 2005
(668 letters)
>mm_chr5_124083041_124084108
Length = 1068
Score = 1239 bits (641), Expect = 0.0
Identities = 662/671 (98%), Gaps = 6/671 (0%)
Strand = Plus / Plus
Query: 1 aaaggactgcaggtgatgggagaagccggtggaccactggttcttttcacatgtggcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaggactgcaggtgatgggagaagccggtggaccactggttcttttcacatgtggcaaa 260
Query: 61 gtaggagtgagggccaacagaagacattgtttgttacagatggctgtaaactctaattcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaggagtgagggccaacagaagacattgtttgttacagatggctgtaaactctaattcg 320
Query: 121 aaatggctctaaagggataccttagtacaaaaccagaaaacattgcatctgtttgctgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatggctctaaagggataccttagtacaaaaccagaaaacattgcatctgtttgctgtc 380
Query: 181 taagacatgggagaagaattcagaagtaaaaaaa-tgtgtattcccttacttcagttata 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 taagacatgggagaagaattcagaagtaaaaaaaatgtgtattcccttacttcagttata 440
Query: 240 tcaatatgt--ctctgtctcctaagtcctttggatttcccagagcaagtctttcgcacca 297
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaa---gggcctctgtctcctaagtcctttggatttcccagagcaagtctttcgcacca 497
Query: 298 aagtagtacctactcttttctccatctttcttttttttcttttttctttttcttaccaaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aagtagtacctactcttttctccatctttcttttttttcttttttctttttcttaccaaa 557
Query: 358 tacatgttcatttctgaggccaagtggaaccgttttctttttgcttttgtttttttcagg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tacatgttcatttctgaggccaagtggaaccgttttctttttgcttttgtttttttcagg 617
Query: 418 cagggtaattctcctgtcttggcctcccaggggctaggattacaggcatgagccactatg 477
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 618 cagggtaattctcctgtctcggcctcccaggggctaggattacaggtatgagccactatg 677
Query: 478 cccagctttatttattgactcatttattctttgatttgaagacctgcttgtctgtgcata 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cccagctttatttattgactcatttattctttgatttgaagacctgcttgtctgtgcata 737
Query: 538 ggtttgtgtggctgtatatatgtgaatatgtccacaagtacacatattagccagatgaca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggtttgtgtggctgtatatatgtgaatatgtccacaagtacacatattagccagatgaca 797
Query: 598 acctcaagtgactttccttgggctctttcgtgtgtttttgaaacatggtctctcactggc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 acctcaagtgactttccttgggctctttcgtgtgtttttgaaacatggtctctcactggc 857
Query: 658 ttcaagtttac 668
|||||||||||
Sbjct: 858 ttcaagtttac 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_a12.g1 MSMg01no490_a12.g1 CHROMAT_FILE:
MSMg01no490_a12.g1 PHD_FILE: MSMg01no490_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:29 2005
(271 letters)
>mm_chr5_124248052_124248722
Length = 671
Score = 524 bits (271), Expect = e-153
Identities = 271/271 (100%)
Strand = Plus / Minus
Query: 1 acaactcggatggagaatgctgctttattttgaggggagaataaaaggtaagacaggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acaactcggatggagaatgctgctttattttgaggggagaataaaaggtaagacaggagg 252
Query: 61 agggaagagctatcttaaaaggtgattgctgtgtgaaaataaaaaaataaaggctggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agggaagagctatcttaaaaggtgattgctgtgtgaaaataaaaaaataaaggctggaga 192
Query: 121 gactgctcagtggttagcactgttacagagaatccaggtttcccagtatccatgccatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gactgctcagtggttagcactgttacagagaatccaggtttcccagtatccatgccatgc 132
Query: 181 agtttaaaccagttactggtgctaagtccagctgctggcaagtctatggcctctgagggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agtttaaaccagttactggtgctaagtccagctgctggcaagtctatggcctctgagggt 72
Query: 241 accagtacctacacaaacagacacacacaca 271
|||||||||||||||||||||||||||||||
Sbjct: 71 accagtacctacacaaacagacacacacaca 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
