Query= MSMg01no490_d14.b1 MSMg01no490_d14.b1 CHROMAT_FILE:
MSMg01no490_d14.b1 PHD_FILE: MSMg01no490_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:45 2005
(667 letters)
>mm_chr5_81994233_81995299
Length = 1067
Score = 1208 bits (625), Expect = 0.0
Identities = 653/667 (97%), Gaps = 8/667 (1%)
Strand = Plus / Minus
Query: 1 aacaaatgttttaataatgaatggtttaaaaacaatagtgcttctagacaaaggcttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 763 aacaaatgttttaataatgaatggtttaaaaacaatagtgcttctagacaaagccttttt 704
Query: 61 gtttttttagaagtactgattaatgagacatatgtcaagaaaaaatagtgtaatggtgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gtttttttagaagtactgattaatgagacatatgtcaagaaaaaatagtgtaatggtgaa 644
Query: 121 tgctgattcaggagcttgtttttattaagtagtttatggtgaaggctgtgactatttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgctgattcaggagcttgtttttattaagtagtttatggtgaaggctgtgactatttttt 584
Query: 181 ctatttatagtggcatctctggttaattaccttgtaatgtattgtgacattaatgcacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctatttatagtggcatctctggttaattaccttgtaatgtattgtgacattaatgcacta 524
Query: 241 ttttactactggaatttacacccctattcagtaataaaatctgtaaattgaagaatgcac 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gtaaactactggaatttacacccctattcagtaataaaatctgtaaattgaagaatgcac 464
Query: 301 ataaagtcattgcaggcataaattatgtgaccaaatgccatgtatggtcacattggactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ataaagtcattgcaggcataaattatgtgaccaaatgccatgtatggtcacattggactt 404
Query: 361 aaagaacagaaactctcaaatttactcattagtgggtaagtgccactgaatttattttcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaagaacagaaactctcaaatttactcattagtgggtaagtgccactgaatttattttcg 344
Query: 421 atggctactttacagccatagagagtacaacagtttactaaagaatgtttcgtaagtagt 480
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 343 atggctactttacagccatagagagtataacagtttactaaagaatgtttcataagtagt 284
Query: 481 tacactattttcctttgggttcctaagaacatactgggcataattcagctgcacagaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tacactattttcctttgggttcctaagaacatactgggcataattcagctgcacagaatt 224
Query: 541 aaaaaggaacatctgaaaagcaagcagagaaatgccatacattctcataaagaatgacag 600
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 223 aaaaaggaacatctgaaaagc--------aaatgccatacattctcataaagaatgacag 172
Query: 601 tgcacaggacagacagttggacccatgaaccaaacccaaactgaatcatcattaagccag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tgcacaggacagacagttggacccatgaaccaaacccaaactgaatcatcattaagccag 112
Query: 661 aatgcag 667
|||||||
Sbjct: 111 aatgcag 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_d14.g1 MSMg01no490_d14.g1 CHROMAT_FILE:
MSMg01no490_d14.g1 PHD_FILE: MSMg01no490_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:45 2005
(685 letters)
>mm_chr5_81867692_81868776
Length = 1085
Score = 1228 bits (635), Expect = 0.0
Identities = 669/685 (97%), Gaps = 8/685 (1%)
Strand = Plus / Plus
Query: 1 atgacactggtgcatagtggcaggaacagctgagagctcacatcatgatctgcaagtagt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atgacactggtgcatagtggcaggaacagctaagagctcacatcatgatctgcaagtagt 260
Query: 61 gagccaagagagatggagagggagagagaacctgagctaactcggctggcttacccccag 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagccaagagagacggagagggagagagaacctgagctaactcggctggcttacccccag 320
Query: 121 ttacacacttcctccaacagtaccacaactaatccttaccagacagttcccccacctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacacacttcctccaacagtaccacaactaatccttaccagacagttcccccacctgga 380
Query: 181 gaccaagttctcattctcattcaaactttcactgattgttttaaaaatcaaattttataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccaagttctcattctcattcaaactttcactgattgttttaaaaatcaaattttataa 440
Query: 241 attgttatatagatgtgtacttggtaaacatcatagttattgattatgaaaatagactaa 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgttatagagatgtgtacttggtaaacatcatagttattgattatgaaaatagactaa 500
Query: 301 gtttcaaattatagagttaaatcacatatgaatggggaactcaaagatatgagaaggaag 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttacaaattatagagttaaatcacatatgaatggggaactcaaagatatgagaaggaag 560
Query: 361 agaaagagtcagggaaactagatagactaaaactaaacatcaggctgccatatctattca 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 agaaagagtcagggaaactagatagactaaaactaaacatcaggctgccacatctattca 620
Query: 421 gaagtgagaaagttttaatgtcctctttaacttcataataaaagaaagccaaataaccta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 gaagtgagaaagttttaatgtcctctttaacttcataataaaagaaagccaaataactta 680
Query: 481 cacagtcaactgttttagcatctctgagaacaagattcaaagagtaataattaattaatt 540
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 cacagtcaactgttttagcatctccgagaacaagattcaaagagtaataattaatta--- 737
Query: 541 aattagaatccagactactatgatcccttctagtatatgcaggatacagcattttctttt 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 -----gaatccagactactatgatcccttctagtatatgcaggatacagcattttctttt 792
Query: 601 tatgtgtatcgaggggaaggtctcaccatgtagttcaagaagaccttgacctgtccctga 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 793 tatgtgtatcgaggggaaggtctcaccatgtagttcaggaagaccttgacctgtccctga 852
Query: 661 acacaggaagccctgaaattcttga 685
|||||||||||||||||||||||||
Sbjct: 853 acacaggaagccctgaaattcttga 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
