BAC Information

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BAC

Clone NameMSMg01-490E01
Chromosome5 (Build37)
Map Location 126,729,842 - 126,858,498
singlet/doubletdoublet
Overlap genenone
Upstream geneScarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490E01.T7 (MSMg01no490_e01.b1)MSMg01-490E01.TJ (MSMg01no490_e01.g1)
ACCAG568536AG568537
length757750
length of high quality
(start - end)
711 (47 - 757)622 (81 - 702)
definitionCHROMAT_FILE: MSMg01no490_e01.b1 PHD_FILE: MSMg01no490_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:47 2005CHROMAT_FILE: MSMg01no490_e01.g1 PHD_FILE: MSMg01no490_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,729,842 - 126,730,547)(126,858,141 - 126,858,498)
sequence
ATCTATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCATAAGTGTTCCAAACAACTTCCTACAATGTTTCTTGTAGCAGA
ATTTGATTTTGGATGTTGAACATCTAATATTAAGAGAAGAAATGTGGAGT
CGGTGTAAAAATACACATCGCCTTGGCTTGGAAAGCATCTCTCTGAGATG
TTAGCAAAGAGTAATCTTACAGCACCAGTCCTGACTGCCCATTTCTGTCA
CTAATAGGTTCTGACATATCCACGTCATCTTGTCATATATCTTCTCATCA
GAGCCTGCAGCTTTTAGAAATGTATTATCAGACATGGTTACTACTTAGGC
AGCATCCCAAGGAATGAGTTCTGAAAGAGGATGCAGAAGAACAAACCTGC
CAGCATCAGCTGTCCCTCCTCTGTGAGCACAGACGTCTTCTGGATGCTGG
TGCTTGCACTTGTATTAACATGCTATTCCACAATATGGCAGATCTTAAGA
TCAGCAATAACCCAACAAATGGACAATAGAATGAGCCCTCTTTCTGCCAG
GAAGTAAGGAAAGAGATTGAGGAACAACGGGGCTGGAGAGATGGCTGAGT
GGCTAAGAGCACTGGCTGCTTTTGCAGAGGTCCAGGATTTGATTCCCAGA
ATCCGTATGGTAGCTCACCACAATCTGTAACTCCAGCTCCAGGGGATCTT
ATGCCCTCATTTGGTCTCTTTAGCACTCCATTCACATACATGCAGGCAAA
ACACCTG
CCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTAAAGTGAAATTAACA
CGGGCTAAAACAGCAACAGTGGATAGTCTCACGCATGTTCTCAACAAAGG
CACCCCACAAGGCCACAGTATCATGAACAATCTGTCATTGGACACAATTT
CCACCTCCAAAAACTAACCATTCCAAGTGAAATTGTGTAGTTATGGCCAT
GGTTTCAATGGCTTGTCTCTAGGTTGACACCACTGGCTATTTTGTGTGAG
TACAAGTATTTAGTACTCAGCATTATTTTTACTCATCTATTTCATTTCAT
AAAACATGCCCATGATGGATTTCATTTATCCACTTTACTGAGAGCACTGC
CATATCAGGAAAGGGTTTGCAGTCCCTATATTTTTTTTAGAATGGAAAAG
TCACAGCATCAGGAACAGGAAGCAGAGATCACATTTCATCCTCATACAGG
AAGCAGAGAAGAGGGAACAGAAAGTGTGGTGAACACATAGTCCTCAAATC
CCACCCCCAGTGATGTATTTCCTCCTTTAGGCCTCCACCTCCTAAAGGTT
CCAAACCTCTGTAAACAGTGCCACCTTCTGGAGATTAATGTTCAAAAACC
CAAGCCTATGAGGGACATCCCTCCTTCAAACAATTACACATAGCAAAAGA
GATTTCTGTCTCAAAGGAAGATATCATAGGACCATAGGGATAATGGGGCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_e01.b1 MSMg01no490_e01.b1 CHROMAT_FILE:
MSMg01no490_e01.b1 PHD_FILE: MSMg01no490_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:47 2005
         (711 letters)



>mm_chr5_126729637_126730747
          Length = 1111

 Score = 1249 bits (646), Expect = 0.0
 Identities = 691/706 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcataagtgttccaaacaacttcctacaatgtttcttgtagcagaatttgattttg 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcataagtggtccaaacaacttcctacaatgtttcttgtagcagaatttgattttg 265

                                                                       
Query: 66  gatgttgaacatctaatattaagagaagaaatgtggagtcggtgtaaaaatacacatcgc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gatgttgaacatctaatattaagagaagaaatgtggagtcggtgtaaaaatacacatcgc 325

                                                                       
Query: 126 cttggcttggaaagcatctctctgagatgttagcaaagagtaatcttacagcaccagtcc 185
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttgccttggaaagcatctctctgagatgttagcaaagagtaatcttacagcaccagtcc 385

                                                                       
Query: 186 tgactgcccatttctgtcactaataggttctgacatatccacgtcatcttgtcatatatc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgactgcccatttctgtcactaataggttctgacatatccacgtcatcttgtcatatatc 445

                                                                       
Query: 246 ttctcatcagagcctgcagcttttagaaatgtattatcagacatggttactacttaggca 305
           |||||||||||| |||||||||||||||||| |  | ||| |||||||||||||||||||
Sbjct: 446 ttctcatcagagtctgcagcttttagaaatggaagaccagccatggttactacttaggca 505

                                                                       
Query: 306 gcatcccaaggaatgagttctgaaagaggatgcagaagaacaaacctgccagcatcagct 365
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 506 gcatcccaaggaatgagttctgaaagaggatgcagaagaacaaacccgccagcatcagct 565

                                                                       
Query: 366 gtccctcctctgtgagcacagacgtcttctggatgctggtgcttgcacttgtattaacat 425
           || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtacctcctctgtgagcacagacatcttctggatgctggtgcttgcacttgtattaacat 625

                                                                       
Query: 426 gctattccacaatatggcagatcttaagatcagcaataacccaacaaatggacaatagaa 485
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 626 gctattccacaatatggcagatcttaagatcagcagtaacccaacaaatggacaatagaa 685

                                                                       
Query: 486 tgagccctctttctgccaggaagtaaggaaagagattgaggaacaacggggctggagaga 545
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 686 tgagccctctttctgccaggaagtaaggaaagagatcgaggaacaacggggctggggaga 745

                                                                       
Query: 546 tggctgagtggctaagagcactggctgcttttgcagaggtccaggatttgattcccagaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tggctgagtggctaagagcactggctgcttttgcagaggtccaggatttgattcccagaa 805

                                                                       
Query: 606 tccgtatggtagctcaccacaatctgtaactccagctccaggggatcttatgccctcatt 665
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tccgtatggtagctcaccacagtctgtaactccagctccaggggatcttatgccctcatt 865

                                                         
Query: 666 tggtctctttagcactccattcacatacatgcaggcaaaacacctg 711
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tggtctctttagcactccattcacatacatgcaggcaaaacacctg 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no490_e01.g1 MSMg01no490_e01.g1 CHROMAT_FILE:
MSMg01no490_e01.g1 PHD_FILE: MSMg01no490_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:47 2005
         (622 letters)



>mm_chr5_126857941_126858962
          Length = 1022

 Score =  685 bits (354), Expect = 0.0
 Identities = 357/358 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtaaagtgaaattaacacgggctaaaacagcaacagtggatagtctcacgcatgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttggtaaagtgaaattaacacgggctaaaacagcaacagtggatagtctcacgcatgttc 499

                                                                       
Query: 61  tcaacaaaggcaccccacaaggccacagtatcatgaacaatctgtcattggacacaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcaacaaaggcaccccacaaggccacagtatcatgaacaatctgtcattggacacaattt 439

                                                                       
Query: 121 ccacctccaaaaactaaccattccaagtgaaattgtgtagttatggccatggtttcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccacctccaaaaactaaccattccaagtgaaattgtgtagttatggccatggtttcaatg 379

                                                                       
Query: 181 gcttgtctctaggttgacaccactggctattttgtgtgagtacaagtatttagtactcag 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acttgtctctaggttgacaccactggctattttgtgtgagtacaagtatttagtactcag 319

                                                                       
Query: 241 cattatttttactcatctatttcatttcataaaacatgcccatgatggatttcatttatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cattatttttactcatctatttcatttcataaaacatgcccatgatggatttcatttatc 259

                                                                     
Query: 301 cactttactgagagcactgccatatcaggaaagggtttgcagtccctatatttttttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cactttactgagagcactgccatatcaggaaagggtttgcagtccctatatttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)