BAC Information

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BAC

Clone NameMSMg01-490F07
Chromosome5 (Build37)
Map Location 88,660,142 - 88,660,654
singlet/doubletsinglet
Overlap geneLOC630942
Upstream geneUgt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941
Downstream geneEG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490F07.T7 (MSMg01no490_f07.b1)MSMg01-490F07.TJ (MSMg01no490_f07.g1)
ACCAG568592AG568593
length769768
length of high quality
(start - end)
657 (49 - 705)575 (80 - 654)
definitionCHROMAT_FILE: MSMg01no490_f07.b1 PHD_FILE: MSMg01no490_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:53 2005CHROMAT_FILE: MSMg01no490_f07.g1 PHD_FILE: MSMg01no490_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTCGCTCTGAGCCCCATTTTTTAAGGGGGTTATTTGA
TTTTCTGGAGTCACCTTCTTGAGTTCTTTATATATATATATATTGGATAT
TAGTCCTCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGC
AGTTTCATGAGGTCCAATTTGTCAATTCTCGATCTTACAGCACAAGCCAT
TGCTGTTCTATTCAGAAATTTTTCCCCTGTGCCCATATCTTCGAGGTTTT
TCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGC
TCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATC
AATTCGCATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGT
TGAAAATGCTGTGTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAG
ATCAAGTGATCATAGGTGTGTGGGTTCTTTTCTGGGTCTTCAATTCTATT
CCATTCAATTCAATTCCATTGGTCTACTTTTCTGTCCTTATACCAGTACC
ATGCCGTTTTTATCACAATTACTCTGCAGTAAAGCTTTAGGTCGGGCATG
GTGATTCTCCCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCT
AGGCTTTTTGGTATTCCAN
NNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCACCTGATGAGTAGCTAC
AGATGATTAATGACTGTTGAGAAGGCAAGAAACATTCCAGTTCAGAGACA
AACACTCACATATGGAATGTAATCCCAATTTTTCAGCACTGGACAGAAAT
ATATATGAAAAAAAAGGTAAATAAGGTCAGTAGGTGTGCTCATTGAACAC
AGAGGCAGCATTAGGTGATTTGTGTGTTCCTGTAGTTCCTGCATCTGTTC
ATGTTGGGCACTCATGAACAGCATAGCCAGGCCTATATACAAGCAACCAT
ATCCAAGGTTGGTGTTGACACTGATCTTGGCACCACCTACTCCTGTGTGG
CTGTCTTCCAGCATGAAAATGTGTAAGTAATTACCAGTGACAAGAGTAAA
CACACCACACTTGTCTGTGTAGCTTTCAATGACACAGAATTAACTAGGAA
TGCTGTGAAGTATCTGGTTTAAATGAACTCCACCAACAGAGTTTTGATGC
CAAATGTCTGATTGGATATAGGTTTGACGATGCTATTGTTCTGTATAATA
TGAAACACTGGCCCTCATGGTGGTAAGTGATGCAGGCAGGTCCAAGATCT
AATTCTAATACTAAAGAGAGACAGATTCTCCCCAGCAGAAGTGTACTCAA
TGGTTATGAAAAAGATGAAGGAAATTACAGAAGCTTACCTTGGGAAGATG
GTTATCAATGCTATGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_f07.g1 MSMg01no490_f07.g1 CHROMAT_FILE:
MSMg01no490_f07.g1 PHD_FILE: MSMg01no490_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:53 2005
         (575 letters)



>mm_chr5_88659913_88660886
          Length = 974

 Score =  820 bits (424), Expect = 0.0
 Identities = 500/546 (91%), Gaps = 33/546 (6%)
 Strand = Plus / Plus

                                                                       
Query: 30  aatgactgttgagaaggcaagaaacattccagttcagagacaaacactcacatatggaat 89
           |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct: 230 aatgactgttgagaaggcaagaaacactctagttcagagacaaactctcacatatggaat 289

                                                                       
Query: 90  gtaatcccaatttttcagcactggacagaaatatatatgaaaaaaaaggtaaataaggtc 149
            |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct: 290 ataatcccaatttttcagctctggacagaaatatatatgaaaaaaa-ggtaaataagatc 348

                                                                       
Query: 150 agtaggtgtgctcattgaacacagaggcagcattaggtgatttgtgtgttcctgtagttc 209
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  
Sbjct: 349 agtaggtgtgctcattgaacacagaggcagcattaggtgatttgtgtggtcctgtagt-- 406

                                                                       
Query: 210 ctgcatctgttcatgttgggcactcatgaacagcatagccaggcctatatacaagcaacc 269
                                         ||||||||||||||||||||||||||||||
Sbjct: 407 ------------------------------cagcatagccaggcctatatacaagcaacc 436

                                                                       
Query: 270 atatccaaggttggtgttgacactgatcttggcaccacctactcctgtgtggctgtcttc 329
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atatccaagggaggtgttgacactgatcttggcaccacctactcctgtgtggctgtcttc 496

                                                                       
Query: 330 cagcatgaaaatgtgtaagtaattaccagtgacaagagtaaacacaccacacttgtctgt 389
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cagcatgaaaatgtgtaaataattaccagtgacaagagtaaacacaccacacttgtctgt 556

                                                                       
Query: 390 gtagctttcaatgacacagaattaactaggaatgctgtgaagtatctggtttaaatgaac 449
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 557 gtagctttcactgacacagaattaactgggaatgctgtgaagtatctggtttaaatgaac 616

                                                                       
Query: 450 tccaccaacagagttttgatgccaaatgtctgattggatataggtttgacgatgctattg 509
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tccaccaacacagttttgatgccaaatgtctgattggatataggtttgacgatgctattg 676

                                                                       
Query: 510 ttctgtataatatgaaacactggccctcatggtggtaagtgatgcaggcaggtccaagat 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttctgtataatatgaaacactggccctcatggtggtaagtgatgcaggcaggtccaagat 736

                 
Query: 570 ctaatt 575
           ||||||
Sbjct: 737 ctaatt 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 974
Length adjustment: 10
Effective length of query: 565
Effective length of database: 964
Effective search space:   544660
Effective search space used:   544660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)