Query= MSMg01no490_l11.b1 MSMg01no490_l11.b1 CHROMAT_FILE:
MSMg01no490_l11.b1 PHD_FILE: MSMg01no490_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:23 2005
(231 letters)
>mm_chr5_42898138_42898768
Length = 631
Score = 398 bits (206), Expect = e-115
Identities = 224/234 (95%), Gaps = 8/234 (3%)
Strand = Plus / Plus
Query: 1 ttcaggggctttccatattacttcctgtgcttattgaatttcctgaaacttctatcttat 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttcaggggctttccatattacttcctgtgcctattgaatttcctgaaacttctatcttat 260
Query: 61 attcaccaactacaaaaacaatataattttaaccaatagctgttacaaaatcaattcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcaccaactacaaaaacaatataattttaaccaatagctgttacaaaatcaattcaga 320
Query: 121 gacactgtggtggtaagaatttttaacgggagatatcaagtttttta----gaacttgaa 176
||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 321 gacactgtgttggtaagaatttttaacgggagatatcaagtt----aaaaagaacttgaa 376
Query: 177 ttctagtatagtcttccacactcgagggacatggaggaaactgatgatttcctg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttctagtatagtcttccacactcgagggacatggaggaaactgatgatttcctg 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space: 138084
Effective search space used: 138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no490_l11.g1 MSMg01no490_l11.g1 CHROMAT_FILE:
MSMg01no490_l11.g1 PHD_FILE: MSMg01no490_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:23 2005
(652 letters)
>mm_chr5_43036117_43037170
Length = 1054
Score = 1183 bits (612), Expect = 0.0
Identities = 643/654 (98%), Gaps = 2/654 (0%)
Strand = Plus / Minus
Query: 1 agatttagtatggaaaaacaagtaaatattcaataacccaaatcttgtgataaatcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 735 agatttagtatggaaaaacaagtaaatattcaataacccaaatcttgtgataaattctcc 676
Query: 61 gtttgaagaccattcatactgacagcaaccatagaagaggccccactacagactgaggag 120
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 675 atttgaagatcattcatactgatagcaaccatagaagaggccccactacagactgaggag 616
Query: 121 acagttttatagaatgactgaggcttggctggtacaagagcaaagtctcagagactccca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acagttttatagaatgactgaggcttggctggtacaagagcaaagtctcagagactcccg 556
Query: 181 agaaaagtcagtgagatgtcagaggctccctgcattctctcatgcatgatctgtataagc 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 555 agaaaagtcagtgagatgtcagagactccctgcattctctcatgcatgatctgtataagc 496
Query: 241 atcactgtgtcctctcttgccaggggccttttgtaaacaataagcgtgtttgtcccagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atcactgtgtcctctcttgccaggggccttttgtaaacaataagcgtgtttgtcccagca 436
Query: 301 tctccatctgtgaataggtgtgatattagaagtccctagaaacttagtaaaaatggatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tctccatctgtgaataggtgtgatattagaagtccctagaaacttagtaaaaatggatgg 376
Query: 361 atgagatgctgaaatgcccatgggcagacagtaagaggcagaacagatcaagcccttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgagatgctgaaatgcccatgggcagacagtaagaggcagaacagatcaagcccttttc 316
Query: 421 ttctaggcctgtcataagagggttaaaaaccatttaa--acatctttttaaagccttaaa 478
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 315 ttctaggcctgtcataagagggttaaaaaccatttaaacacatccttttaaagccttaaa 256
Query: 479 aatctgagtttttgtgtagcaaggaagcagggatgcagaaggcccaggaggtactgtcag 538
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 255 aatctgagtttttgtgtagcaaggaaacagggatgcagaaggcccaggaggtactgtcag 196
Query: 539 ctaaggctcaataggaggatgacatttaagctgagttccaaagaataaacaagagccagc 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 195 ctaaggctcaataggaggatgacatttaagctgagttccaaagaataagcaagagccagc 136
Query: 599 cacacaaaaaggccaacaaagcagtccaggacttaggaaccttgtgtacaaagg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cacacaaaaaggccaacaaagcagtccaggacttaggaaccttgtgtacaaagg 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1054
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1044
Effective search space: 670248
Effective search space used: 670248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
