BAC Information

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BAC

Clone NameMSMg01-490P09
Chromosome5 (Build37)
Map Location 83,508,498 - 83,658,000
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433912, LOC100039434
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490P09.T7 (MSMg01no490_p09.b1)MSMg01-490P09.TJ (MSMg01no490_p09.g1)
ACCAG569068AG569069
length750754
length of high quality
(start - end)		319 (322 - 640)650 (80 - 729)
definitionCHROMAT_FILE: MSMg01no490_p09.b1 PHD_FILE: MSMg01no490_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:42 2005CHROMAT_FILE: MSMg01no490_p09.g1 PHD_FILE: MSMg01no490_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,657,682 - 83,658,000)(83,508,498 - 83,509,147)
sequence
NAATCAAAATTTGCGGTTGCNAAACGACCCACAATACGGATCGGAGGNGN
GGAANNCAGGGTGGCATTACCAAGGCGAACAAAAAAGAAATAACAGACTG
TCTTGAAACTTGCCACTTACAGTGTAAGTGGAGAAATGAAACATAAGATA
TACTGTAGTTTGTAGCTCTATTGAACATGTAAAGATGGCATCTATATGTT
TTCAAAAATTTTAATAATTCTTTGAGAAATTTTTACTGTGTATTTGATTA
TATTCACCTCTTTTCCAAAGTCCTCCTATAATTGCCCTCTATGCCCTCCC
TTCTTACCCACATTGATTTGTTTTTTTTTTTCAANTTTTTATTAGATATT
GTCAAGTAGAAGTTGAAAACCAATCTACTCAGTTCCATCTTTCACAAGAA
TACAGTGGAAACTCACATGAAAATTTCTTTAGAAGAAAATCATTTCACTT
AGCCATAAACTTGAATAAGAAATTATTATATTTTTATTAAGTTTATTTTT
ACACTCCATATTCCATTCTCTGCTCCCATCCTGATCCATGCTCCGACTGC
TCCACATACCACACCTTCTCCCCACTCCCTCTGTCTCCACATGGATACTC
CTCACCCCACAACCCCTGACCTCTAAACTCCCTGGGGCTTCCAATCTCTT
GAGGGTTAGGAGCATCATCTCTGAATGAACACAGACCTGGCAGTCTTCTA
TTGTATGTGTGTTGGGGGCCTCATATCAGCAGGTGTAGGCTGTCTGTTTG


NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATGAGTTTTGCATTCTTTT
TACATTCTTTTTATATTCTTTATTTTCTTATTGGAAGGTTTATTTCAGGT
GTATAAAATCATTTCAACATAATTAGTGGTTGGTTCACCACATTACCCCA
CCTTGACGAATGTCTGCATCAATTTTCCATTCTACATAATAAAAATGCAT
ATGAAATATATATCTTCTCTAGTCTTATTGAATTATCATTCAGCTTATTC
TCAAAAAACTTTGATCCATTAATATGCTTACAAAAATAACAACAAAACAT
AATCATCTATGAAATGAGTGACATAAGCTATATTTAATGAAATATACTAC
TTCTCGAAACTAAACATAAATATTTACTATATAGTTAAAAAATTTCAAGT
GATAGAAATCTTGACCAAATTATGTTAGATTATTATTGTTAATTTAAAAA
AGACAGTCCAATGAACTGAAATATACAGGTATAAATATCACTCTTGAAGT
TATTACACAAGTGTCATAATATATACAAAATAAAAGAATGATATACAAGT
ACCATAATATCACTTTTTGTATTTGAAAAGTTTTTACCTCTTCAAGGGTG
CATGGATCCAGTCAAATAGATCTGTTGTTGTTTAAAACATAAAATGCTTT
TCTTGCTAGGTAAACAGAAATAGGAATGCAAAAAATAATTACTCATGCAA
AGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_p09.b1 MSMg01no490_p09.b1 CHROMAT_FILE:
MSMg01no490_p09.b1 PHD_FILE: MSMg01no490_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:42 2005
         (319 letters)



>mm_chr5_83657647_83658365
          Length = 719

 Score =  603 bits (312), Expect = e-177
 Identities = 317/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttttttttcaantttttattagatattgtcaagtagaagttgaaaaccaatctactca 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttttttttttcaattttttattagatattgtcaagtagaagttgaaaaccaatctactca 295

                                                                       
Query: 61  gttccatctttcacaagaatacagtggaaactcacatgaaaatttctttagaagaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gttccatctttcacaagaatacagtggaaactcacatgaaaatttctttagaagaaaatc 235

                                                                       
Query: 121 atttcacttagccataaacttgaataagaaattattatatttttattaagtttattttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atttcacttagccataaacttgaataagaaattattatatttttattaagtttattttta 175

                                                                       
Query: 181 cactccatattccattctctgctcccatcctgatccatgctccgactgctccacatacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cactccatattccattctctgctcccatcctgatccatgctccgactgctccacatacca 115

                                                                       
Query: 241 caccttctccccactccctctgtctccacatggatactcctcaccccacaacccctgacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 114 caccttctccccactccctctgtctccacatggatactcctcaccccacaatccctgacc 55

                              
Query: 301 tctaaactccctggggctt 319
           |||||||||||||||||||
Sbjct: 54  tctaaactccctggggctt 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no490_p09.g1 MSMg01no490_p09.g1 CHROMAT_FILE:
MSMg01no490_p09.g1 PHD_FILE: MSMg01no490_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:42 2005
         (650 letters)



>mm_chr5_83508298_83509347
          Length = 1050

 Score = 1210 bits (626), Expect = 0.0
 Identities = 644/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgagttttgcattctttttacattctttttatattctttattttcttattggaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgagttttgcattctttttacattctttttatattctttattttcttattggaaggt 260

                                                                       
Query: 61  ttatttcaggtgtataaaatcatttcaacataattagtggttggttcaccacattacccc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ttatttcaggtgtataaaatcatttcaacataattagtagttggttcaccacattacccc 320

                                                                       
Query: 121 accttgacgaatgtctgcatcaattttccattctacataataaaaatgcatatgaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttgacgaatgtctgcatcaattttccattctacataataaaaatgcatatgaaatat 380

                                                                       
Query: 181 atatcttctctagtcttattgaattatcattcagcttattctcaaaaaactttgatccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatcttctctagtcttattgaattatcattcagcttattctcaaaaaactttgatccat 440

                                                                       
Query: 241 taatatgcttacaaaaataacaacaaaacataatcatctatgaaatgagtgacataagct 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 taaaatgcttacaaaaataacaacaaaacataatcatctatgaaatgagtgacataacct 500

                                                                       
Query: 301 atatttaatgaaatatactacttctcgaaactaaacataaatatttactatatagttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatttaatgaaatatactacttctcgaaactaaacataaatatttactatatagttaaa 560

                                                                       
Query: 361 aaatttcaagtgatagaaatcttgaccaaattatgttagattattattgttaatttaaaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 aaatttcaagtgatagaaatcttgaccaaattatgttagattattattgttactttaaaa 620

                                                                       
Query: 421 aagacagtccaatgaactgaaatatacaggtataaatatcactcttgaagttattacaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagacagtccaatgaactgaaatatacaggtataaatatcactcttgaagttattacaca 680

                                                                       
Query: 481 agtgtcataatatatacaaaataaaagaatgatatacaagtaccataatatcactttttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgtcataatatatacaaaataaaagaatgatatacaagtaccataatatcactttttg 740

                                                                       
Query: 541 tatttgaaaagtttttacctcttcaagggtgcatggatccagtcaaatagatctgttgtt 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 tatttgaaaagtttttacctcttcaagggtgcatggatccagttaaatagatctgttgtt 800

                                                             
Query: 601 gtttaaaacataaaatgcttttcttgctaggtaaacagaaataggaatgc 650
           ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtttaaaacgtaaaatgcttttcttgctaggtaaacagaaataggaatgc 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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