BAC Information

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BAC

Clone NameMSMg01-491A24
Chromosome5 (Build37)
Map Location 135,139,822 - 135,140,430
singlet/doubletsinglet
Overlap geneLimk1
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081
Downstream geneEln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491A24.T7 (MSMg01no491_a24.b1)MSMg01-491A24.TJ (MSMg01no491_a24.g1)
ACCAG569145AG569146
length761772
length of high quality
(start - end)
615 (39 - 653)567 (67 - 633)
definitionCHROMAT_FILE: MSMg01no491_a24.b1 PHD_FILE: MSMg01no491_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:51 2005CHROMAT_FILE: MSMg01no491_a24.g1 PHD_FILE: MSMg01no491_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TCTGTATTCCAGGCTGGCCTTGAACTCAGAGATCCGTCGCTGCCTCCTGA
GTGCTGGGACTAAAAGGTGTGCGCCACGGCTGGTGCCACCACCACCACTA
CCACAGGGCTTGAGAGAGACTCTTAAACAGAAGACACGGTGGCTCCCCGT
GTGAGAGGAGACTGGGTGCCCTGCTGTCTAGGCAGGGCAGAGCAAGGGAA
GAAGGTCCAGGCCCAGCCTGTGTGTGCTCCTGCAGGTAAAGGTCATGCGC
TGCCTGGAGCACCCTAACGTGCTCAAGTTCATCGGAGTGCTCTACAAGGA
CAAGCGGCTAAACTTCATCACAGAGTACATCAAGGGCGGCACCCTGCGGG
GCATCATCAAGAACATGGTGAGCAGGGTTGGGACTGGGGTGTGGCTTGGT
TGGTAGAGTGCTGGCCTAAGCTGGCATACATGCGACTTTGGCTTCCATCC
CAAGCACTGCATAAACCTAATGTAGGCCCCACCCCTTTAATCCTAGCACG
AGGGAAACCAGTGGGTCTTAGGAGTTCAGGGCCAGCCCAGTCTACAGAGC
AAGTTCCATGCCAGCCAGGGCTACATAAACAATGAGACCCTTTCTAAATA
TACACACCAAAACAAAAAAAGTAAGAAAGGGGGATTGGGGAGAAAGAGGG
CGGGGTCCCACTGTCCCCTTGTAGGGCAGTGAACGCCAATAAACCTAGAC
CTCTCCATTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAGCCACAGTGGCTACATAGTGAGTTTTAGGCC
AGTCTGGCTCAGTTAGTGGAGTGATCGCCTAGCACACATGAAGCCCTGGG
CTCCATCCCCAGCATCAAATGAACTGAGTATGATGGTGCACACCTGCCAT
CTCAGCACTCAGCAGGAGGAGGATTAGACGTTTAAGGTCATCCTCAGCTA
CGTTGTGAACTCAAGACCTGCTGTGACCTCATGAGACTCTGCCTCAAAAA
AGAGAAAGAAGAAAAAAAGTATCCTAGCTAGCATTGAGTCAGCTGGACAC
AGCCTGGAACCAACTGAAAACAGAATTGCAATTGGGTAATTATCCTTACC
AGGCTGGTCTGGGGTGTGTTCGTGAGGATTGTTCTGATCGTTAATTGATG
CAAGAGGGCCCAGCCCACTGTGGGCAGCACCATTCCCTAGACAGGTGGTC
CTGGGCTATATGACAAAGCTCATAACACAGCAGACAGCTACCAAGCCGAC
AAGTAACTCTCCTGTGGTTTCTGCTTCAAGCTCTGGCTTGAGTTTCTGCC
CTGACTTCCTTCAGTGAGGGACTACAGCCCCCAAGTGTAAGGCAAATGAA
CACTTTCTGACAGCTACACAAAGCAGACCAATTCTCCCAAGCCAGCATCC
CTGGCTCTGTGGGGTGAAGATGCGTGGCANGTCACTGTGGGGATCTACAT
TGTTATCCAGGNCAGACAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_a24.b1 MSMg01no491_a24.b1 CHROMAT_FILE:
MSMg01no491_a24.b1 PHD_FILE: MSMg01no491_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:51 2005
         (615 letters)



>mm_chr5_135139754_135140768
          Length = 1015

 Score = 1116 bits (577), Expect = 0.0
 Identities = 601/609 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtattccaggctggccttgaactcagagatccgtcgctgcctcctgag 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggaattcactctgtagaccaggctggccttgaactcagagatccgtcgctgcctcctgag 618

                                                                       
Query: 64  tgctgggactaaaaggtgtgcgccacggctggtgccaccaccaccactaccacagggctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 617 tgctgggactaaaaggtgtgcgccacggctggtgccaccaccaccactacctcagggctt 558

                                                                       
Query: 124 gagagagactcttaaacagaagacacggtggctccccgtgtgagaggagactgggtgccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gagagagactcttaaacagaagacacggtggctccccgtgtgagaggagactgggtgccc 498

                                                                       
Query: 184 tgctgtctaggcagggcagagcaagggaagaaggtccaggcccagcctgtgtgtgctcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgctgtctaggcagggcagagcaagggaagaaggtccaggcccagcctgtgtgtgctcct 438

                                                                       
Query: 244 gcaggtaaaggtcatgcgctgcctggagcaccctaacgtgctcaagttcatcggagtgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcaggtaaaggtcatgcgctgcctggagcaccctaacgtgctcaagttcatcggagtgct 378

                                                                       
Query: 304 ctacaaggacaagcggctaaacttcatcacagagtacatcaagggcggcaccctgcgggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctacaaggacaagcggctaaacttcatcacagagtacatcaagggcggcaccctgcgggg 318

                                                                       
Query: 364 catcatcaagaacatggtgagcagggttgggactggggtgtggcttggttggtagagtgc 423
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 317 catcatcaagaacatggtgagcagggttggggctggggtgtggcttggttggtagagtgc 258

                                                                       
Query: 424 tggcctaagctggcatacatgcgactttggcttccatcccaagcactgcataaacctaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tggcctaagctggcatacatgcgactttggcttccatcccaagcactgcataaacctaat 198

                                                                       
Query: 484 gtaggccccacccctttaatcctagcacgagggaaaccagtgggtcttaggagttcaggg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 197 gtaggccccacccctttaatcctagcacgagggaaaccagtgggtcttatgagttcaagg 138

                                                                       
Query: 544 ccagcccagtctacagagcaagttccatgccagccagggctacataaacaatgagaccct 603
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ccagtccagtctacagagcgagttccatgccagccagggctacataaacaatgagaccct 78

                    
Query: 604 ttctaaata 612
           |||||||||
Sbjct: 77  ttctaaata 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)