Query= MSMg01no491_b09.b1 MSMg01no491_b09.b1 CHROMAT_FILE:
MSMg01no491_b09.b1 PHD_FILE: MSMg01no491_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:53 2005
(706 letters)
>mm_chr4_103435850_103436950
Length = 1101
Score = 1232 bits (637), Expect = 0.0
Identities = 682/700 (97%), Gaps = 5/700 (0%)
Strand = Plus / Minus
Query: 7 gaattcaagtcctctgtccgaacagtatgagtctgcaatcttaactactgagcaatctct 66
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 739 gaattcaagtcctctgtaagaacagtatgaatctgcaatcttaactactgagcaatctct 680
Query: 67 ctatcctctagacgtgtttttagaaggaggatttgatgtaatttaacactcatggtgcac 126
||||||||||||| |||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct: 679 ctatcctctagacttgtttttagaagcaagatttgatgtgatttaacactcatggtgcac 620
Query: 127 aagactattggggtcaaggtcttctgggaaatttgggacatgagagtcattcatgggcag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagactattggggtcaaggtcttctgggaaatttgggacatgagagtcattcatgggcag 560
Query: 187 aggaaagaagaacaagacaatccattcaggaaacaacttctttcttttttctctatcatc 246
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 559 aggaaggaagaacaagacaatccattcaggaaacaacttc-----tttttctctatcatc 505
Query: 247 ttaggaggttggttacacattgctcaccaaacttctctgagaaccagaggaaaggacaaa 306
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 ctaggaggttggttacacattgctcaccaaacttctctgagaatcagaggaaaggacaaa 445
Query: 307 gactcagagatgtaaagtgatcaagctaagtctcgaaaaagatgtgggctagatcagcca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gactcagagatgtaaagtgatcaagctaagtctcgaaaaagatgtgggctagatcagcca 385
Query: 367 cagtgccacctgaggacattgtaggtcttgtggtcctgtgatcattgcagggctttccca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtgccacctgaggacattgtaggtcttgtggtcctgtgatcattgcagggctttccca 325
Query: 427 agactctcactttcactaagtcctttcttcttagctggcagagtgaaaggttctgtcaac 486
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 agactctcactttcactaagtcctttcttcttagctggcagagtaaaaggttctgtcaac 265
Query: 487 ccattccccactcaatgatttatttagagaatgctcattcttatgactcccagcactctc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccattccccactcaatgatttatttagagaatgctcattcttatgactcccagcactctc 205
Query: 547 tgtttctatttcttaaccatctactctaccaacagctaggcttcaagaggacagagacat 606
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 tgtttctatttcttaaccatctactctaccaacagctaggcttcacgaggacagagacat 145
Query: 607 ttatctgtttatatcatctaactgctaaaaactcagcctgtcacatgatcagcattcnaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 144 ttatctgtttatatcatctaactgctaaaaactcagcctgtcacatgatcagcattcaaa 85
Query: 667 actgttaaatgaaggagtaaatgatgaataatggagctaa 706
||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 actgttaaatgaaggagtaaatgatgaataatggagctaa 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1101
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1091
Effective search space: 759336
Effective search space used: 759336
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no491_b09.g1 MSMg01no491_b09.g1 CHROMAT_FILE:
MSMg01no491_b09.g1 PHD_FILE: MSMg01no491_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:53 2005
(442 letters)
>mm_chr5_44604945_44605786
Length = 842
Score = 812 bits (420), Expect = 0.0
Identities = 440/450 (97%), Gaps = 8/450 (1%)
Strand = Plus / Minus
Query: 1 caagacagccagagctacacagagaaaccctgtctcgaaaaaaaaaaga--aaaaa---- 54
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 707 caagacagccagagctacacagagaaaccctgtctcgaaaaaaaaaagaggaaaaataaa 648
Query: 55 -aaa-aaaaggagcagggtgggtggggaaggtttgcttagaaggcgagctgcggaaatag 112
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 647 taaataaaaggagcagggtgggtggggaaggtttgcttagaaggcgagctgcagaaatag 588
Query: 113 tcaagggtggggcctgagaagaaaatatgtggcacagataggaaaaggtagattgtgaac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tcaagggtggggcctgagaagaaaatatgtggcacagataggaaaaggtagattgtgaac 528
Query: 173 aggcatcatcgggcatgtgtgcatacaccaggtggtgtgggggaagggactgaaagatcc 232
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aggcatcatagggcatgtgtgcatacaccaggtggtgtgggggaagggactgaaagatcc 468
Query: 233 aaggatggggatttgagtgtgaacaaggagcaataaggactgaaagatgggccaggtcta 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaggatggggatttgagtgtgaacaaggagcaataaggactgaaagatgggccaggtcta 408
Query: 293 ggtttgactcctggtcaaggtgaacagttaagaactcaggcttcaggatgagactacaca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggtttgactcctggtcaaggtgaacagttaagaactcaggcttcaggatgagactacaca 348
Query: 353 gtgtatattccttaggagtgctctagccgtgtaggacagacagtgagcctagcagaggcc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtgtatattccttaggagtgctctagccgtgtaggacagacagtgagcctagcagaggcc 288
Query: 413 tgcttggacagtttcctctccttttgagca 442
||||||||||||||||||||||||||||||
Sbjct: 287 tgcttggacagtttcctctccttttgagca 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
