Query= MSMg01no491_e01.b1 MSMg01no491_e01.b1 CHROMAT_FILE:
MSMg01no491_e01.b1 PHD_FILE: MSMg01no491_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:06 2005
(435 letters)
>mm_chr5_126470678_126471512
Length = 835
Score = 605 bits (313), Expect = e-177
Identities = 349/361 (96%), Gaps = 2/361 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaccaggtcttgctctccctgtttctctggtccaccatcttgggcatttcctgt 63
||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 204 ggaattcaccaggtcaggttctccctatttctctggtccaccatcttggtcatttcctgt 263
Query: 64 atccttaggtgggtgggagattctgcagctgtgtagggtgttgtacctgcatccacagga 123
||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 264 atccttaggtgggtgggggattctgcagctgtgcagggtgttgtacctgcctccacagga 323
Query: 124 acaagtactctgtttccaagggtatctagctatcagtgggaaagtacagcaagatgttct 183
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct: 324 acaagtactctgtttccaagggtatttcgctatcagtgggaaagtacagcaagatgtt-t 382
Query: 184 tt-tccttaataagttccaagacatctatctaggtgtagaccaaaaggatgtctgaggga 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttctccttaataagttccaagacatctatctaggtgtagaccaaaaggatgtctgaggga 442
Query: 243 accacatatgatggctagtgttctcttcatcagcctgacagaaactatagtcaaatggaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 accacatatgatggctagtgttctcttcatcagcctgacagaaactatagtcaaatggaa 502
Query: 303 gagggaacctcagttgagttgcctccatcagattggcctgaggaaagtctttagggcatt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gagggaacctcagttgagttgcctccatcagattggcctgaggaaagtctttagggcatt 562
Query: 363 a 363
|
Sbjct: 563 a 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_e01.g1 MSMg01no491_e01.g1 CHROMAT_FILE:
MSMg01no491_e01.g1 PHD_FILE: MSMg01no491_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:07 2005
(532 letters)
>mm_chr5_126618376_126619307
Length = 932
Score = 990 bits (512), Expect = 0.0
Identities = 527/532 (99%)
Strand = Plus / Minus
Query: 1 caagctagtctgggctacacactgagacccaaaagagaaagcaagagagaggggggaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 caagctagtctgggctacacactgagacccaaaagagaaagcaagagagaggggggaggg 673
Query: 61 cttggggtgagacatctttgcagcagtctgtggttctctttccttcttgctgacctggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cttggggtgagacatctttgcagcagtctgtggttctctttccttcttgctgacctggaa 613
Query: 121 ggtcctgaggtcagaagaagggcaaatagcttcaggttctgctttggaaatggaaggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggtcctgaggtcagaagaagggcaaatagcttcaggttctgctttggaaatggaaggaag 553
Query: 181 gtggcccgatcttctaataaagtgaaatttggatttccctgcagtcttcttccagcccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gtggcccgatcttctaataaagtgaaatttggatttccctgcagtcttcttccagcccta 493
Query: 241 cacttaactacctgaggctgagcaccaagtagcttggcctgggaaaatagacttgccttc 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cactgaactacctgaggctgagcaccaagtagcttggcctgggaaaatagacttgccttc 433
Query: 301 aaaacccatgcatgataacaacacccctgtgagtctgagctagcagaaaaaccttagcaa 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 432 aaaacccatgcatgataacaacacccctgtgagtctgagctagcagaacaaccttagcaa 373
Query: 361 gcacctgccacgaggcttgtgaactctctgccttccagttctagtgatttcagcccagag 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gcacctgccaggaggcttgtgaactctctgccttccagttctagtgatttcagcccagag 313
Query: 421 tagggtttcttatctcagcaagtgcaacaggtctggctagatttggaccacacttaccca 480
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 312 tagggtttcttacctcagcaagtgcaacaggtctggctagatttgtaccacacttaccca 253
Query: 481 tgccagatacctaagacaaaaatatcatttccttacaatgctgctttgccat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgccagatacctaagacaaaaatatcatttccttacaatgctgctttgccat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
