TAGTGTGGGTGAGAGATGTGAGTTGTGTGAAGTATATATATATGAAGGTA
TAAGGATTTGAGAACGGAGGGTCGTGGAGATGCAAGGCATAAGGCGTGAG
AGGGAAACGGAGTATGTGTGTTATTATAGGTGGGAATAGATAGAATGAAA
TTATGTGGATTATTTATATGATGTGGAAAAAGAGATGGAGATGGAGTGGT
AATTTGCGTTTCTTGTTGTTGTCTTATGTAAAAATCGGGGGAGTTTAGGT
ATTGGGAGTGTGTGGTTTTTAGGTAGAGATGGTATATGGTATTTTATTTG
CATTTCCTNCTCCTCNNNNNNNNNNNNNNNNNTGGTAGGGAATGGTATAA
TGTGGGTATAATTCTATAGATAGTTAGATGAAGAGGGATAACTTATATAG
GGTGAATATCTCAGTTGGTTTTTTTNNNNNTTNNGGGGGGGAAATNTTTC
TNNNNNNNNNNNNTGGGAGTGAGTGGGTTATTGTGGGTTCCNNNNNNTAA
GGTAGAGGGGAGGGGATAGGGGTTTTTTAATATTTTTNGNGNGNNGGGGG
GGGGGTGGGGNNNNNNNNNNCTCTTNNTAAAATTNTCGGGGCGTCGTGAT
NCGAAACTCACTAAANGGTTCGNGACCTNTCGGCNNNANTNNNCAGACGN
NNCTGGCACCNCTCTNGNNTGGGTATNNNNNNNGNANNGTNANNGGNNCN
ANCTGNATGNNAANNTTCAAAAATTNNTNTGTCANCTATNGATCTNNNCA
NNATCCCAGANCNGACTNAANCCATCTTATGGCCCTCACCCCATAAACAG
CCGNGNCTTGGGCNAGTCANTGCAGNCANG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTATATTTATATATTTTGGATATTAGCCCACT
GTCTGATGAAGAGTTAGTGAAGATCTTTGCCCAGTCTGCCATTTTGTCCC
ATTGACAATGTCCTTTGCCTTACCAAAAAAAAAAAAAAAAGTTTTGTCCC
ACATTGCTGGACTTTTTTATCTGTTGATCTTTTGCTTGTATTATGGTTTC
TGATTTTGTGTTTTTTATAGAGTTGTCTGTATTTGTGTGCTTCTATGTGT
ACATATCTCTGTACATTTGTGTTTATTGTGCTTTTCCTTTGTTTTATTTG
TTTCATAGTTTTATTTTTAAACTACCTGTCTGTTTTCTAGAGAGAGGAAA
AGGGCATGGAATTTCAATGGTGAGAATGTAGGAGTGATTTGGAAGAAGAT
GGGGAAAGAAAGCAGTGATCAGGATATATTATATGGAAAAACGTTAAGTT
TTATAAAGTATCATTGTATTCTATAAAAGAAAGAAATCTGAGTTAGACAG
TTTGAACTAAAACAAAACGATTGGTGATATCCAGAATGAGTCTCTTTCCC
GACTGATAAACTGCCCAACAATAAAATATTTATGGGCTTTTAAATATATA
TTTACATTTTCATGGGCTTCCCCCTGACTCAAGATAATTACCAGATGACT
CTCACTCAGTAGTGACTCACCCTCGAGACATGATCACATTTCTTACCTCT
TATAACGTACTTTAAAGACAATTTCA

Query= MSMg01no491_g24.g1 MSMg01no491_g24.g1 CHROMAT_FILE:
MSMg01no491_g24.g1 PHD_FILE: MSMg01no491_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:21 2005
         (505 letters)



>mm_chr5_97541532_97542436
          Length = 905

 Score =  920 bits (476), Expect = 0.0
 Identities = 496/506 (98%), Gaps = 7/506 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtatatttatatattttggatattagcccactgtctgatgaagagttagtgaagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttgtatatttatatattttggatattagcccactgtctgatgaagagttagtgaagatc 510

                                                                       
Query: 61  tttgcccagtctgccattttgtcccattgacaatgtcctttgccttaccaaaaaaaaaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||      |||||
Sbjct: 509 tttgcccagtctgccattttgtcccattgacaatgtcctttgccttacc------aaaaa 456

                                                                       
Query: 121 aaaaagttttgtcccacattgctggacttttttatctgttgatcttttgcttgtattatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaaaagttttgtcccacattgctggacttttttatctgttgatcttttgcttgtattatg 396

                                                                       
Query: 181 gtttctgattttgtgttttttatagagttgtctgtatttgtgtgcttctatgtgtacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtttctgattttgtgttttttatagagttgtctgtatttgtgtgcttctatgtgtacata 336

                                                                       
Query: 241 tctctgtacatttgtgtttattgtgcttttcctttgttttatttgtttcatagttttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tctctgtacatttgtgtttattgtgcttttcctttgttttatttgtttcatagttttatt 276

                                                                       
Query: 301 tttaaactacctgtctgttttctagagagaggaaaagggcatggaatttcaatggtgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 275 tttaaactacctgtctgttttctagagagaggaaaagggcatggaatttcaatggcgaga 216

                                                                       
Query: 361 atgtaggagtgatttggaagaagatgggg-aaagaaagcagtgatcaggatatattatat 419
           | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 215 aggtaggagtgatttggaagaagatgggggaaagaaagcagtgatcaggatatattatat 156

                                                                       
Query: 420 ggaaaaacgttaagttttataaagtatcattgtattctataaaagaaagaaatctgagtt 479
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggaaaaacattaagttttataaagtatcattgtattctataaaagaaagaaatctgagtt 96

                                     
Query: 480 agacagtttgaactaaaacaaaacga 505
           ||||||||||||||||||||||||||
Sbjct: 95  agacagtttgaactaaaacaaaacga 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)