BAC Information

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BAC

Clone NameMSMg01-491K03
Chromosome5 (Build37)
Map Location 107,197,515 - 107,197,872
singlet/doubletsinglet
Overlap geneEG666922
Upstream geneLrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400
Downstream geneHfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491K03.T7 (MSMg01no491_k03.b1)MSMg01-491K03.TJ (MSMg01no491_k03.g1)
ACCAG569581AG569582
length745773
length of high quality
(start - end)
251 (74 - 324)346 (63 - 408)
definitionCHROMAT_FILE: MSMg01no491_k03.b1 PHD_FILE: MSMg01no491_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:36 2005CHROMAT_FILE: MSMg01no491_k03.g1 PHD_FILE: MSMg01no491_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTAGCTCGCGCGGAANTCT
TTGTTNATAACATGGAGCAAGTTTTTAAATGGGGGTTATTNTGATTTTCN
TGGAGTCCACCTNTCTTGAGTTCTTTATATATATTGGGATATTAGTCCCC
NTCTCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTTTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTA
TGAGATCTCATTTGTAGATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTGTCTCTTCTTCGAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCACTGTCTCTGCTTTTATGTGGAATTCCTTGAT
TCACTTAGATTTGACCTTACCACAATGATATAGGAATGGATCAATTCGCA
TTCTTCTACATGATAACCGTCAGTTGTGTCAGCATCATTTGTTGAAAATG
CTGACTTTCCCTTACTTTACTTCCTGAAATCTAGAAGGCTGAATAGGAAT
AGTCTTCCTACAAATTGTCATTCTGACCATTTTCTAACTGTATTTCTTAT
GCACTTCTTCTCCATTATCATTTGGATTAGGATATTGGTTATTGTTATAT
ATGTTACTTTGAGCTCTTTCTGGTTTACTTGATACTAGAATTTGTACTAG
TACTGGGGCTCCTTCTATGTCTCCTTCCTTTGGACGTGTAAGGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCAGCCAGGCATGGTGGTGCACGCCTTTAATCCCAGCAC
TTGAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTA
CAGAGTGAATTCTGGAATAGCCAGGGCTACACAGAGAAACCCTGTCTCGA
AAAACCAAAAAAAAAAAAAAAGGCAACACCTTTGTCAGGGCTAGCATGGT
CTTGATAAGGACTAGTAGAGACAGATGACATTAGAAGCGGAAGTGGGTGA
CATTTATAAAAGAATTTTTGACACAAATTGTGTTTAGTTCTTAGATAGTG
TGTAGCTTAAGGAAAAGAAATGCTGGATCCCTATGTTTATCAAGGAGAAT
GACTTAAGGACCTCATTGGTTGTAGTTTCAAATTAATTTTATCCAAACCT
TCAATCCATAGTTGAAGAAACTCTGGCTGTGCTGGATGACATGGGTACAA
GCACAAGGTCACAGTTGGATGCTGTGGAAAGATCCTGTCATGGAGTATGT
GGTTGGCATATGGAGGGTCCGTTCCACCAAGCTTGCATCTTCCACAGGGT
GCTTTTGATTAGTTGTCTGTGCTTGTCAGCATGTGTTTGTTGACTTCTAG
GCCTAAAAAATCATGTTTTTTCTAGAAAAAAATATCCTTACATCCCTGTT
CTTTATTTTCTCCACCAGTGTCTTATTGAACCCTTGGTAAATTACTGTGT
GTGTTAATTCATACTGTTGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_k03.g1 MSMg01no491_k03.g1 CHROMAT_FILE:
MSMg01no491_k03.g1 PHD_FILE: MSMg01no491_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:36 2005
         (346 letters)



>mm_chr5_107197327_107198072
          Length = 746

 Score =  603 bits (312), Expect = e-177
 Identities = 341/362 (94%), Gaps = 20/362 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagccaggcatggtggtgcacgcctttaatcccagcacttgagaggcagaggcaggcaga 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cagccgggcatggtggtgcacgcctttaatcccagcacttgagaggcagaggcaggcaga 248

                                                                       
Query: 61  tttctgagttcgaggccagcctggtctacagagtgaattctggaatagccagggctacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttctgagttcgaggccagcctggtctacagagtgaattctggaatagccagggctacac 308

                                                                       
Query: 121 agagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaa------------aggcaacacc 168
           ||||||||||||||||||||||||||||||||||||||            ||||||||||
Sbjct: 309 agagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaagaattcctcagaaggcaacacc 368

                                                                       
Query: 169 tttgtcagggctagcatggtcttgataaggactagtagagacagatgacattagaagcgg 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttgtcagggctagcatggtcttgataaggactagtagagacagatgacattagaagcgg 428

                                                                       
Query: 229 aagtgggtgacatttataaaagaattttt----gacacaaattgtgtttagttcttagat 284
           |||||||||||||||||||||||||        |||||||||||||||||||||||||||
Sbjct: 429 aagtgggtgacatttataaaagaat----aaaggacacaaattgtgtttagttcttagat 484

                                                                       
Query: 285 agtgtgtagcttaaggaaaagaaatgctggatccctatgtttatcaaggagaatgactta 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtgtgtagcttaaggaaaagaaatgctggatccctatgtttatcaaggagaatgactta 544

             
Query: 345 ag 346
           ||
Sbjct: 545 ag 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)